This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3mpo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:37, 16 January 2019) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3mpo.jpg|left|200px]]
 
-
<!--
+
==The crystal structure of a hydrolase from Lactobacillus brevis==
-
The line below this paragraph, containing "STRUCTURE_3mpo", creates the "Structure Box" on the page.
+
<StructureSection load='3mpo' size='340' side='right' caption='[[3mpo]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3mpo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Lacba Lacba]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MPO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MPO FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HAD, LVIS_0481 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=387344 LACBA])</td></tr>
-
{{STRUCTURE_3mpo| PDB=3mpo | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mpo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mpo OCA], [http://pdbe.org/3mpo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3mpo RCSB], [http://www.ebi.ac.uk/pdbsum/3mpo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3mpo ProSAT]</span></td></tr>
-
 
+
</table>
-
===The crystal structure of a hydrolase from Lactobacillus brevis===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
3MPO is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Lactobacillus_brevis Lactobacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MPO OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mp/3mpo_consurf.spt"</scriptWhenChecked>
-
[[Category: Lactobacillus brevis]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Burley, S K.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
</jmolCheckbox>
-
[[Category: Swaminathan, S.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mpo ConSurf].
-
[[Category: Zhang, Z.]]
+
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Lacba]]
 +
[[Category: Burley, S K]]
 +
[[Category: Structural genomic]]
 +
[[Category: Swaminathan, S]]
 +
[[Category: Zhang, Z]]
[[Category: Hydrolase]]
[[Category: Hydrolase]]
-
[[Category: New york sgx research center for structural genomic]]
+
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-
[[Category: Nysgxrc]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
[[Category: Sgx]]
[[Category: Sgx]]
-
[[Category: Structural genomic]]
 
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 12 11:26:35 2010''
 

Current revision

The crystal structure of a hydrolase from Lactobacillus brevis

3mpo, resolution 2.90Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools