This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3mqz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:44, 16 January 2019) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3mqz.jpg|left|200px]]
 
-
<!--
+
==Crystal Structure of Conserved Protein DUF1054 from Pink Subaerial Biofilm Microbial Leptospirillum sp. Group II UBA.==
-
The line below this paragraph, containing "STRUCTURE_3mqz", creates the "Structure Box" on the page.
+
<StructureSection load='3mqz' size='340' side='right' caption='[[3mqz]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3mqz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"leptospirillum_rubarum"_aliaga_goltsman_et_al._2009 "leptospirillum rubarum" aliaga goltsman et al. 2009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MQZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MQZ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3mqz| PDB=3mqz | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">UBAL2_82410687 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=419542 "Leptospirillum rubarum" Aliaga Goltsman et al. 2009])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mqz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mqz OCA], [http://pdbe.org/3mqz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3mqz RCSB], [http://www.ebi.ac.uk/pdbsum/3mqz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3mqz ProSAT]</span></td></tr>
-
===Crystal Structure of Conserved Protein DUF1054 from Pink Subaerial Biofilm Microbial Leptospirillum sp. Group II UBA.===
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3MQZ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Leptospirillum_rubarum Leptospirillum rubarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MQZ OCA].
+
<jmolCheckbox>
-
[[Category: Leptospirillum rubarum]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mq/3mqz_consurf.spt"</scriptWhenChecked>
-
[[Category: Chin, S.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Cui, H.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Edwards, A.]]
+
</jmolCheckbox>
-
[[Category: Joachimiak, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mqz ConSurf].
-
[[Category: Kim, Y.]]
+
<div style="clear:both"></div>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
__TOC__
-
[[Category: Savchenko, A.]]
+
</StructureSection>
-
[[Category: Xu, X.]]
+
[[Category: Leptospirillum rubarum aliaga goltsman et al. 2009]]
 +
[[Category: Chin, S]]
 +
[[Category: Cui, H]]
 +
[[Category: Edwards, A]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Kim, Y]]
 +
[[Category: Structural genomic]]
 +
[[Category: Savchenko, A]]
 +
[[Category: Xu, X]]
[[Category: Alpha-beta fold]]
[[Category: Alpha-beta fold]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
[[Category: Unknown function]]
[[Category: Unknown function]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 23 08:52:08 2010''
 

Current revision

Crystal Structure of Conserved Protein DUF1054 from Pink Subaerial Biofilm Microbial Leptospirillum sp. Group II UBA.

3mqz, resolution 1.30Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3mqz"
Personal tools