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4txh

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Revision as of 06:17, 17 April 2019

Crystal structure of uridine phosphorylase from Schistosoma mansoni in APO form

Structural highlights

4txh is a 4 chain structure with sequence from Blood fluke. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
Related:	4txj, 4txl, 4txm, 4txn
Gene:	Smp_082430, UP1 (Blood fluke)
Activity:	Uridine phosphorylase, with EC number 2.4.2.3
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

Reports of Schistosoma mansoni strains resistant to praziquantel, the only therapeutic strategy available for the treatment of schistosomiasis, have motivated the scientific community towards the search for new possible therapies. Biochemical characterization of the parasite's metabolism is an essential component for the rational development of new therapeutic alternatives. One of the so far uncharacterized enzymes is uridine phosphorylase (UP) (EC 2.4.2.3), for which the parasite genome presents two isoforms (SmUPa and SmUPb) that share 92% sequence identity. In this paper, we present crystal structures for SmUPa and SmUPb in their free states as well as bound to different ligands. This we have complemented by enzyme kinetic characterization and phylogenetic analyses. Both enzymes present an overall fold and active site structure similar to other known UPs. The kinetic analyses showed conclusively that SmUPa is a regular uridine phosphorylase but by contrast SmUPb presented no detectable activity. This is particularly noteworthy given the high level of sequence identity between the two isoforms and is probably the result of the significant differences observed for SmUPb in the vicinity of the active site itself, suggesting that it is not a UP at all. On the other hand, it was not possible to identify an alternative function for SmUPb, although our phylogenetic analyses and expression data suggest that SmUPb is still functional and plays a role in parasite metabolism. The unusual UPb isoform may open up new opportunities for understanding unique features of S. mansoni metabolism.

Analysis of two Schistosoma mansoni uridine phosphorylases isoforms suggests the emergence of a protein with a non-canonical function.,da Silva Neto AM, Torini de Souza JR, Romanelo L, Cassago A, Serrao VH, DeMarco R, Brandao-Neto J, Garratt RC, Pereira HD Biochimie. 2016 Feb 18. pii: S0300-9084(16)00050-X. doi:, 10.1016/j.biochi.2016.02.007. PMID:26898674^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ da Silva Neto AM, Torini de Souza JR, Romanelo L, Cassago A, Serrao VH, DeMarco R, Brandao-Neto J, Garratt RC, Pereira HD. Analysis of two Schistosoma mansoni uridine phosphorylases isoforms suggests the emergence of a protein with a non-canonical function. Biochimie. 2016 Feb 18. pii: S0300-9084(16)00050-X. doi:, 10.1016/j.biochi.2016.02.007. PMID:26898674 doi:http://dx.doi.org/10.1016/j.biochi.2016.02.007

1 Structural highlights
2 Publication Abstract from PubMed
3 See Also
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4txh"

@@ Line 1: / Line 1: @@
 ==Crystal structure of uridine phosphorylase from Schistosoma mansoni in APO form==
-<StructureSection load='4txh' size='340' side='right' caption='[[4txh]], [[Resolution|resolution]] 1.89&Aring;' scene=''>
+<StructureSection load='4txh' size='340' side='right'caption='[[4txh]], [[Resolution|resolution]] 1.89&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4txh]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TXH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4TXH FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4txh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Blood_fluke Blood fluke]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TXH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4TXH FirstGlance]. <br>
 </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4txj|4txj]], [[4txl|4txl]], [[4txm|4txm]], [[4txn|4txn]]</td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Smp_082430, UP1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6183 Blood fluke])</td></tr>
 <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Uridine_phosphorylase Uridine phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.3 2.4.2.3] </span></td></tr>
 <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4txh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4txh OCA], [http://pdbe.org/4txh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4txh RCSB], [http://www.ebi.ac.uk/pdbsum/4txh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4txh ProSAT]</span></td></tr>
@@ Line 25: / Line 26: @@
 __TOC__
 </StructureSection>
+[[Category: Blood fluke]]
+[[Category: Large Structures]]
 [[Category: Uridine phosphorylase]]
 [[Category: Brandao-Neto, J]]

4txh

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Revision as of 06:17, 17 April 2019

Crystal structure of uridine phosphorylase from Schistosoma mansoni in APO form

Structural highlights

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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