This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
4xdp
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Crystal structure of human KDM4C catalytic domain bound to tris== | ==Crystal structure of human KDM4C catalytic domain bound to tris== | ||
| - | <StructureSection load='4xdp' size='340' side='right' caption='[[4xdp]], [[Resolution|resolution]] 2.07Å' scene=''> | + | <StructureSection load='4xdp' size='340' side='right'caption='[[4xdp]], [[Resolution|resolution]] 2.07Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[4xdp]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XDP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4XDP FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4xdp]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XDP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4XDP FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4xdo|4xdo]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4xdo|4xdo]]</td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">KDM4C, GASC1, JHDM3C, JMJD2C, KIAA0780 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4xdp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xdp OCA], [http://pdbe.org/4xdp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4xdp RCSB], [http://www.ebi.ac.uk/pdbsum/4xdp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4xdp ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4xdp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xdp OCA], [http://pdbe.org/4xdp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4xdp RCSB], [http://www.ebi.ac.uk/pdbsum/4xdp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4xdp ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| Line 26: | Line 27: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Human]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Boriack-Sjodin, P A]] | [[Category: Boriack-Sjodin, P A]] | ||
[[Category: Swinger, K K]] | [[Category: Swinger, K K]] | ||
[[Category: Lysine-specific demethylase 4c]] | [[Category: Lysine-specific demethylase 4c]] | ||
| + | [[Category: Oxidoreductase]] | ||
Revision as of 07:07, 29 May 2019
Crystal structure of human KDM4C catalytic domain bound to tris
| |||||||||||
