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Ferritin
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(Difference between revisions)
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</StructureSection> | </StructureSection> | ||
| - | ==3D Structures of Ferritin== | ||
| - | Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} | ||
| - | {{#tree:id=OrganizedByTopic|openlevels=0| | ||
| - | |||
| - | *Ferritin | ||
| - | |||
| - | **[[2jd6]], [[2jd7]] – PfFR - ''Pyrococcus furiosus'' <br /> | ||
| - | **[[3a68]] – soFR from gene SferH4 – soybean<br /> | ||
| - | **[[3a9q]] - soFR from gene SferH4 (mutant) <br /> | ||
| - | **[[3egm]], [[3bve]], [[3bvf]], [[3bvi]], [[3bvk]], [[3bvl]] – HpFR – ''Heliobacter pylori''<br /> | ||
| - | **[[5c6f]] – HpFR (mutant) + Fe <br /> | ||
| - | **[[1z4a]], [[1vlg]] – FR – ''Thermotoga maritime''<br /> | ||
| - | **[[1s3q]], [[1sq3]], [[3kx9]], [[5v5k]] – FR – ''Archaeoglubus fulgidus''<br /> | ||
| - | **[[1krq]] – FR – ''Campylobacter jejuni''<br /> | ||
| - | **[[1eum]] - EcFR – ''Escherichia coli''<br /> | ||
| - | **[[1qgh]] – LiFR - ''Listeria innocua''<br /> | ||
| - | **[[3qz3]] - VcFR – ''Vibrio cholerae''<br / > | ||
| - | **[[3vnx]] – FR – ''Ulva pertusa''<br /> | ||
| - | **[[4ism]], [[4isp]], [[4itt]], [[4itw]], [[4iwj]], [[4iwk]], [[4ixk]], [[3e6r]], [[3e6s]] – PnmFR – ''Pseudo-nitschia multiseries''<br /> | ||
| - | **[[4zkh]], [[4zkw]], [[4zkx]], [[4zl5]], [[4zl6]], [[4zlw]], [[4zmc]] – PnmFR (mutant) + Fe<br /> | ||
| - | **[[1z6o]] – FR – ''Trichoplusia ni''<br /> | ||
| - | **[[5n5f]] – FR – ''Haliangium ochraceum''<br /> | ||
| - | **[[5ouz]], [[5ouw]] – SyFR – ''Synechococcus''<br /> | ||
| - | **[[6gkc]], [[6gka]] – SyFR + Fe <br /> | ||
| - | **[[6gkb]] – SyFR (mutant) + Fe <br /> | ||
| - | **[[6a4u]] – FR (mutant) – ''Marsupenaeus japonicus'' <br /> | ||
| - | **[[4reu]] – EcFR + Fe<br /> | ||
| - | **[[4xgs]] – EcFR (mutant) + Fe2O2<br /> | ||
| - | **[[4ztt]] – EcFR (mutant) + Fe2O + Fe2 + Fe + O2<br /> | ||
| - | **[[4cmy]] – FR + Fe – ''Chlorobaculum tepidum''<br /> | ||
| - | |||
| - | *Ferritin light chain (FTL) | ||
| - | |||
| - | **[[1fha]], [[5lg8]] - hFTL+ Fe - human<br /> | ||
| - | **[[3o7s]], [[3u90]], [[6msx]], [[6gxj]] – hoFTL - horse<br /> | ||
| - | **[[4v1w]], [[6rjh]] – hoFTL – cryo EM<br /> | ||
| - | **[[3noz]], [[3np0]], [[3np2]], [[3o7r]] – hoFTL (mutant) <br /> | ||
| - | **[[5lg2]] - hoFTL + Fe<br /> | ||
| - | **[[5czu]] - hoFTL (mutant) + Fe<br /> | ||
| - | **[[3rav]], [[3rd0]] – hoFTL + barbiturate | ||
| - | **[[1lb3]], [[1h96]] – mFTL – mouse<br /> | ||
| - | |||
| - | *Ferritin middle subunit (FTM) | ||
| - | |||
| - | **[[4das]], [[1mfr]], [[1bg7]] – bFTM - bullfrog<br /> | ||
| - | **[[4p18]], [[5xhi]], [[5xhm]], [[5xhn]], [[5xho]] – bFTM (mutant) <br /> | ||
| - | **[[4lpj]], [[4lqj]], [[6i36]], [[4lqv]], [[4lyu]], [[4lyx]], [[4my7]], [[3rbc]], [[3rgd]] – bFTM + Fe <br /> | ||
| - | **[[4mjy]], [[4ml5]], [[4mn9]], [[5j8w]], [[5j93]], [[5j9v]], [[5jac]], [[6iaj]], [[6iaf]], [[6i9t]], [[6i9p]] – bFTM (mutant) + Fe<br /> | ||
| - | **[[4lqh]], [[1mfr]], [[3ka3]] – bFTM + Mg<br /> | ||
| - | **[[4lpm]], [[4mku]], [[5j8s]], [[3se1]], [[3sh6]], [[3shx]] – bFTM (mutant) + Mg<br /> | ||
| - | **[[3ka4]] – bFTM + Co<br /> | ||
| - | **[[4lpn]], [[3ka8]], [[3ka6]], [[3ka9]] – bFTM (mutant) + Co<br /> | ||
| - | **[[1bg7]] – bFTM + Ca<br /> | ||
| - | **[[3re7]] – bFTM + Cu<br /> | ||
| - | |||
| - | *Ferritin heavy subunit (FTH) | ||
| - | |||
| - | **[[5gou]], [[5yi5]] – hFTH <br /> | ||
| - | **[[5xb1]], [[6ipc]], [[5znd]] – hFTH (mutant)<br /> | ||
| - | **[[4oyn]], [[4y08]], [[4zjk]], [[5jkk]], [[5jkl]], [[5jkm]], [[6b8g]], [[6b8f]], [[4ykh]] – hFTH + Fe<br /> | ||
| - | **[[6ipp]] – hFTH (mutant) + Fe<br /> | ||
| - | **[[3wnw]] – mFTL + Fe<br /> | ||
| - | **[[5obA]] – mFTL (mutant) + Fe<br /> | ||
| - | **[[2z6o]] – FTH – ''Trichoplusia ni''<br /> | ||
| - | |||
| - | *apo-ferritin (apo-FR) | ||
| - | |||
| - | **[[2clu]], [[2cn6]] - apo-hFR (mutant)+Zn <br /> | ||
| - | **[[3h7g]] – apo-hoFR+Au <br /> | ||
| - | **[[1hrs]] - apo-hoFR+protoporphyrin<br /> | ||
| - | **[[5wpn]] - apo-FR (mutant)+Zn – parchment tube worm<br /> | ||
| - | **[[2x17]] – apo-PfFR+Ag <br /> | ||
| - | **[[2jd8]] – apo-PfFR+Zn<br /> | ||
| - | |||
| - | *apo-ferritin light chain (apo-FTL) | ||
| - | |||
| - | **[[2fg8]] – apo-hFTL + Cs<br /> | ||
| - | **[[3kxu]], [[2ffx]], [[2fg4]] - apo-hFTL+ Cd<br /> | ||
| - | **[[2zg7]], [[2z5p]], [[2z5q]], [[2z5r]], [[3fi6]], [[3af7]], [[5e2d]], [[5hqo]] – apo-hoFTL+Pd<br /> | ||
| - | **[[2zg8]], [[2zg9]], [[3af8]], [[3af9]], [[3noz]], [[3np0]], [[3np2]] - apo-hoFTL (mutant)+Pd<br /> | ||
| - | **[[6env]] – apo-hoFTL+Au<br /> | ||
| - | **[[3o7s]], [[3wvw]] - apo-hoFTL+Ru<br /> | ||
| - | **[[2zur]] - apo-hoFTL+Rh<br /> | ||
| - | **[[3o7r]], [[3wvu]], [[3wvv]] - apo-hoFTL (mutant) + Ru<br /> | ||
| - | **[[4z3b]] - apo-hoFTL + Mn<br /> | ||
| - | **[[5axs]], [[5e1u]], [[5erj]], [[5erk]], [[5ix6]], [[5mij]], [[5mik]], [[2w0o]], [[3f32]], [[1ies]], [[1ier]], [[1dat]], [[1aew]], [[2g4h]], [[2za6]] - apo-hoFTL + Cd<br /> | ||
| - | **[[6hju]], [[6hjt]] – apo-hoFTL + Pt<br /> | ||
| - | **[[6fj9]], [[6fx8]], [[6enw]], [[6env]] – apo-hoFTL + Au<br /> | ||
| - | **[[3f33]], [[3f34]], [[3f35]], [[3f36]], [[3f37]], [[3f38]], [[3f39]] - apo-hoFTL+phenols<br /> | ||
| - | **[[2v2i]], [[2v2j]] - apo-hoFTL+haemin<br /> | ||
| - | **[[2gyd]] - apo-hoFTL+diaziflurane<br /> | ||
| - | **[[1xz1]] - apo-hoFTL+halothane<br /> | ||
| - | **[[1xz3]] - apo-hoFTL+isoflurane<br /> | ||
| - | **[[1gwg]] - apo-hoFTL+I3<br /> | ||
| - | **[[2v2l]], [[2v2m]], [[2v2n]], [[2v2o]], [[2v2p]], [[2v2r]], [[2v2s]] - apo-hoFTL (mutant)+haemin<br /> | ||
| - | **[[2fg8]] – apo-hFTL + Cs<br /> | ||
| - | **[[3kxu]], [[2ffx]], [[2fg4]] - apo-hFTL+ Cd<br /> | ||
| - | **[[1fha]], [[5lg8]] - apo-hFTL+ Fe<br /> | ||
| - | **[[4de6]] - apo-hoFTL + arachidonic acid<br /> | ||
| - | **[[1rcc]], [[1rcd]], [[1rci]] – apo-bFTL+tartrate+Mg<br /> | ||
| - | **[[1rce]], [[1rcg]] - apo-bFTL+tartrate+Mn<br /> | ||
| - | |||
| - | *apo-ferritin heavy chain (apo-FTH) | ||
| - | |||
| - | **[[3erz]] – apo-hFTH+Hg<br /> | ||
| - | **[[3es3]] - apo-hFTH+Au<br /> | ||
| - | **[[5z91]], [[5z8s]], [[5z8j]] - apo-hFTH (mutant) +Au<br /> | ||
| - | **[[5vtd]] – apo-hFTH+ Co<br /> | ||
| - | **[[5up7]] – apo-hFTH+ Ni<br /> | ||
| - | **[[5n26]] – apo-hFTH+ Pt<br /> | ||
| - | **[[6ftv]] – apo-hFTH + Ru<br /> | ||
| - | **[[2fha]] – apo-hFTH + Ca<br /> | ||
| - | **[[2cn7]], [[2fha]] – apo-hFTH (mutant) + Ca<br /> | ||
| - | **[[2z6m]] – hFTH + Zn<br /> | ||
| - | **[[2chi]], [[2clu]], [[2cei]], [[2cih]], [[2cn6]], [[2iu2]], [[5cmq]], [[5cmr]], [[2z6m]] – apo-hFTH (mutant) + Zn<br /> | ||
| - | **[[5up8]], [[5up9]] – apo-hFTH+ Zn + oxamate derivative<br /> | ||
| - | **[[1r03]], [[3ajo]], [[5n27]] – hFTH + Mg<br /> | ||
| - | **[[3ajp]], [[3ajq]], [[6ipq]], [[6ipo]], [[5z8u]] - hFTH (mutant) + Mg<br /> | ||
| - | **[[4dyx]], [[4dyy]], [[4dyz]], [[4dz0]] – apo-hFTH (mutant) + Cu<br /> | ||
| - | **[[5gu0]], [[5gu1]], [[5gu2]], [[5gu3]], [[2za7]], [[2za8]] - apo-hoFTH (mutant) + Cd<br /> | ||
| - | **[[5obb]] – mFTL + Tb<br /> | ||
| - | |||
| - | *Ferritin light+heavy chains | ||
| - | |||
| - | **[[5gn8]] – hFTH + Ca<br /> | ||
| - | |||
| - | *Bacterioferritin (BFR) 0r ferroxidase | ||
| - | |||
| - | **[[3gvy]] – BFR – ''Rhodobacter sphaeroides''<br /> | ||
| - | **[[1jgc]] - BFR – ''Rhodobacter capsulatus''<br /> | ||
| - | **[[1ji4]] – BFR – ''Helicobacter pylori''<br /> | ||
| - | **[[1nf4]], [[1nf6]], [[1nfv]] – BFR – ''Desulfovibrio desulfuricans''<br /> | ||
| - | **[[3fvb]] – BmBFR - ''Brucelia melitensis''<br /> | ||
| - | **[[2fkz]], [[2fl0]], [[1sof]] – BFR – ''Azotobacrter vinelandii''<br /> | ||
| - | **[[2wtl]], [[3qb9]], [[3uof]], [[3uoi]] – BFR – ''Mycobacterium tuberculosis''<br /> | ||
| - | **[[3bkn]] - MsBFR – ''Mycobacterium smegmatis''<br /> | ||
| - | **[[3is7]], [[3is8]], [[3ise]], [[3isf]], [[3r2h]], [[3r2k]], [[3r2l]], [[3r2m]], [[3r2o]], [[3r2r]], [[3r2s]], [[6nlf]], [[5d8o]] – PaBFR – ''Pseudomonas aeruginosa''<br /> | ||
| - | **[[5d8x]], [[5d8s]], [[5d8r]], [[5d8q]], [[4tog]], [[4tof]], [[4tod]], [[4tob]], [[4to9]] - PaBFR (mutant) <br /> | ||
| - | **[[5d8p]] - PaBFR + Fe<br /> | ||
| - | **[[5d8y]], [[4toh]], [[4toe]], [[4toc]], [[4toa]] - PaBFR (mutant) + Fe<br /> | ||
| - | **[[6nli]], [[6nlk]], [[6nll]], [[6nlm]], [[6nln]] - PaBFR + inhibitor<br /> | ||
| - | **[[6nlg]] - PaBFR (mutant) + inhibitor<br /> | ||
| - | **[[4E6K]] - PaBFR + BFR-associated protein<br /> | ||
| - | **[[1bfr]], [[1bcf]], [[2htn]], [[2vxi]], [[3e1j]], [[3e1l]], [[3e1m]], [[3e1n]], [[3e1p]], [[3e1o]], [[3e1q]], [[2y3q]] – EcBFR <br /> | ||
| - | **[[4xku]], [[4xkt]], [[4xks]], [[4u3g]] - EcBFR (mutant) <br /> | ||
| - | **[[3e2c]], [[4cvr]], [[4cvt]] – EcBFR (mutant) + Zn<br /> | ||
| - | **[[4cvp]], [[3ghq]] - EcBFR (mutant) + Fe<br /> | ||
| - | **[[4cvs]] – EcBFR (mutant) + Cd<br /> | ||
| - | **[[4am2]], [[4am4]], [[4am5]] – BFR + Fe – ''Blastochloris viridis''<br /> | ||
| - | **[[5zur]] - BFR + Fe - ''Achromobacter''<br /> | ||
| - | **[[5xx9]] - BFR + Fe – ''Streptomyces coelicolor''<br /> | ||
| - | |||
| - | *Thioferritin (TFR) | ||
| - | |||
| - | **[[2vzb]] – TFR – ''Bacterioides fragilis'' | ||
| - | |||
| - | *DNA-binding Protein of Starved cells (Dps) | ||
| - | |||
| - | **[[3iq1]] – VcDps <br /> | ||
| - | **[[3ge4]] – BmDps <br /> | ||
| - | **[[2iy4]] – Dps + Fe – ''Listeria monocytogenes''<br /> | ||
| - | **[[2bkc]], [[2bk6]], [[2bjy]] – LiDps (mutant) <br /> | ||
| - | **[[6hv1]] – Dps – ''Listeria innocua''<br /> | ||
| - | **[[2f7n]] – Dps + Co – ''Deinococcus radiodurans''<br /> | ||
| - | **[[4a25]] - Dps + Mn – ''Kinecoccus radiodurans''<br /> | ||
| - | **[[1tjo]], [[1tk6]], [[1tkp]], [[1tko]], [[1moj]] – Dps + Fe – ''Halobacterium salinarum''<br /> | ||
| - | **[[1o9r]] – Dps + Fe – ''Agrobacterium tumefaciens''<br /> | ||
| - | **[[1dps]], [[1f33]], [[5xgo]] – EcDps <br /> | ||
| - | **[[1f30]] – EcDps + Zn<br /> | ||
| - | **[[1jre]] – EcDps + Cd<br /> | ||
| - | **[[1jts]], [[1l8h]], [[1l8i]] – EcDps (mutant)<br /> | ||
| - | **[[2ux1]] – SsDps + Zn – ''Streptococcus suis''<br /> | ||
| - | **[[2v15]] – SsDps + Te<br /> | ||
| - | **[[2xjm]] – SsDps + Co<br /> | ||
| - | **[[2xjn]] – SsDps + Cu<br /> | ||
| - | **[[2xjo]] – SsDps + Ni<br /> | ||
| - | **[[2xkq]] – SsDps + Mn<br /> | ||
| - | **[[2yw6]], [[2yw7]] – MsDps<br /> | ||
| - | **[[3ak8]], [[3ak9]] – Dps + Mg – ''Salmonella enterica''<br /> | ||
| - | **[[1n1q]] – Dps + Fe2O– ''Brevibacillus brevis''<br /> | ||
| - | **[[1vei]], [[1vel]], [[1veq]] – MsDps + Fe <br /> | ||
| - | **[[4dyu]] – Dps + Zn – ''Yersinia pestis''<br /> | ||
| - | **[[5hjf]], [[5hjh]] - NpDps – ''Nostoc punctiforme''<br /> | ||
| - | **[[5i4j]] - NpDps + Zn <br /> | ||
| - | **[[5h4h]] - NpDps + Fe <br /> | ||
| - | |||
| - | *MrgA | ||
| - | |||
| - | **[[2chp]] – MrgA – ''Bacillus subtilis''<br /> | ||
| - | }} | ||
== References == | == References == | ||
<references/> | <references/> | ||
[[Category:Topic Page]] | [[Category:Topic Page]] | ||
Revision as of 08:21, 30 June 2019
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References
- ↑ Wang W, Knovich MA, Coffman LG, Torti FM, Torti SV. Serum ferritin: Past, present and future. Biochim Biophys Acta. 2010 Aug;1800(8):760-9. doi: 10.1016/j.bbagen.2010.03.011. , Epub 2010 Mar 19. PMID:20304033 doi:http://dx.doi.org/10.1016/j.bbagen.2010.03.011
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