This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Flavodoxin

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:11, 3 July 2019) (edit) (undo)
 
(One intermediate revision not shown.)
Line 5: Line 5:
*<scene name='41/413119/Cv/5'>Apo-Flavodoxin from Helicobacter pylori complexed with benzamidine and chloride ion</scene>.
*<scene name='41/413119/Cv/5'>Apo-Flavodoxin from Helicobacter pylori complexed with benzamidine and chloride ion</scene>.
*<scene name='41/413119/Cv/6'>Cl coordination site</scene>. Water molecules shown as red spheres.
*<scene name='41/413119/Cv/6'>Cl coordination site</scene>. Water molecules shown as red spheres.
-
 
-
</StructureSection>
 
== 3D Structures of Flavodoxin ==
== 3D Structures of Flavodoxin ==
 +
[[Flavodoxin 3D structures]]
-
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
+
</StructureSection>
-
{{#tree:id=OrganizedByTopic|openlevels=0|
+
-
 
+
-
* Apo FDX
+
-
 
+
-
**[[2kqu]], [[1dx9]] – AnFDX (mutant) apo – ''Anabanea'' – NMR<br />
+
-
**[[2bmv]] – HpFDX apo - ''Helicobacter pylori''<br />
+
-
**[[3d7n]] – FDX apo – ''Agrobacterium tumefaciens''<br />
+
-
**[[2rg1]] - EcFDX WrbA apo - ''Escherichia coli''<br />
+
-
**[[2hna]], [[2hnb]], [[2m6r]], [[2m6s]] – EcFDX apo – NMR<br />
+
-
**[[1qhe]], [[1ftg]] – nFDX apo – Nostoc<br />
+
-
**[[1bu5]] – DvFDX apo+riboflavin - ''Desulfovibrio vulgaris''<br />
+
-
**[[5ljl]] - SpFDX - ''Streptococcus pneumoniae''<br />
+
-
 
+
-
* FDX containing FMN oxidized (quinone)
+
-
 
+
-
**[[3f6r]], [[3f6s]], [[3kap]] – DdFDX-ox - ''Desulfovibrio desulfuricans''<br />
+
-
**[[4heq]] - FDX-ox – ''Desulfovibrio gigas'' <br />
+
-
**[[1ag9]] – EcFDX-ox<br />
+
-
**[[1flv]] – nFDX-ox<br />
+
-
**[[1xyy]], [[1j9g]], [[1c7f]], [[1akr]], [[1akt]], [[1akw]] – DvFDX-ox (mutant)<br />
+
-
**[[2fx2]], [[3fx2]], [[4fx2]], [[5fx2]], [[1fx1]] – DvFDX-ox<br />
+
-
**[[1czk]], [[1czr]] – SeFDX-ox (mutant) - ''Synechococcus elongates''<br />
+
-
**[[1czn]] – SeFDX-ox I<br />
+
-
**[[1ofv]] – SeFDX-ox II<br />
+
-
**[[1czu]], [[1d03]] - SeFDX-ox II<br />
+
-
**[[2fdx]], [[1fld]], [[1fvx]], [[2fax]], [[3nll]], [[4nll]], [[4nul]], [[5nll]] – CbFDX-ox (mutant) - ''Clostridium beijerinckii''<br />
+
-
**[[2fcr]] – FDX-ox – ''Chondrus crispus''<br />
+
-
**[[5veg]] - FDX-ox – ''Lactobacillus reuteri'' <br />
+
-
**[[5k9b]] - FDX-ox II – ''Azotobacter vinelandii'' <br />
+
-
**[[5ljp]] - AnFDX-ox (mutant) <br />
+
-
**[[1fue]] – HpFDX-ox<br />
+
-
**[[4j8p]] - FDX-ox – ''Bacterioides uniformis'' <br />
+
-
**[[1i1o]] - DvFDX-ox <br />
+
-
**[[5yob]], [[5yoc]], [[5yoe]], [[5yog]] - DvFDX-ox (mutant) <br />
+
-
**[[5lji]] - SpFDX-ox <br />
+
-
 
+
-
* FDX containing FMNH (semiquinone)
+
-
 
+
-
**[[2x2o]], [[2x2p]] – NrdI-sq – ''Bacillus cereus''<br />
+
-
**[[3kaq]], [[3f90]] – DdFDX-sq <br />
+
-
**[[1xt6]], [[1wsw]], [[1xyv]], [[1akv]], [[1wsb]] - DvFDX-sq (mutant)<br />
+
-
**[[1czh]], [[1czl]] - SeFDX-sq (mutant)<br />
+
-
**[[2fox]], [[5nul]]– CbFDX-sq<br />
+
-
 
+
-
* FDX containing FMNH2 (hydroquinone)
+
-
 
+
-
**[[2fz5]] – FDX-red – ''Megasphaera elsdenii'' – NMR<br />
+
-
**[[1c7e]], [[1aku]], [[1akq]] - DvFDX-red (mutant)<br />
+
-
**[[1czo]] - SeFDX-red (mutant)<br />
+
-
**[[1d04]] – SeFDX-red<br />
+
-
**[[1fla]], [[1fln]], [[2flv]], [[2fvx]], [[5ull]], [[6nul]] – CbFDX-red (mutant)<br />
+
-
 
+
-
* Other FDX
+
-
**[[3esx]], [[3esy]], [[3esz]], [[2v5u]], [[2v5v]], [[1obo]], [[1obv]] - AnFDX (mutant)<br />
 
-
**[[1rcf]], [[1flv]] - AnFDX<br />
 
-
**[[2wc1]] – FDX – ''Rhodobacter capsulatus''<br />
 
-
**[[2w5u]] – HpFDX+C3 inhibitor 1fue - HpFDX<br />
 
-
**[[2kaq]] – DdFDX <br />
 
-
**[[2r97]], [[2r96]] – EcFDX WrbA<br />
 
-
**[[1ahn]] – EcFDX<br />
 
-
**[[2q9u]] – FDX di-iron – ''Giardia intestinalis''<br />
 
-
**[[2ark]] – FDX – ''Aquifex aeolicus''<br />
 
-
**[[1yob]] – FDX II – ''Azotobacter vinelandii''<br />
 
-
**[[1j9e]], [[1f4p]], [[1i10]], [[1azl]] – DvFDX (mutant)<br />
 
-
**[[1j8q]] - DvFDX<br />
 
-
}}
 
== References ==
== References ==
<references/>
<references/>
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

Apo-Flavodoxin from Helicobacter pylori complexed with benzamidine and chloride ion (PDB code 2bmv)

Drag the structure with the mouse to rotate

References

  1. ↑ Hoover DM, Ludwig ML. A flavodoxin that is required for enzyme activation: the structure of oxidized flavodoxin from Escherichia coli at 1.8 A resolution. Protein Sci. 1997 Dec;6(12):2525-37. PMID:9416602 doi:10.1002/pro.5560061205

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Jaime Prilusky

Retrieved from "http://52.214.119.220/wiki/index.php/Flavodoxin"
Personal tools