This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3kb2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: {{Seed}} 200px <!-- The line below this paragraph, containing "STRUCTURE_3kb2", creates the "Structure Box" on the page. You may change the PDB parameter (which se...)
Current revision (11:07, 17 July 2019) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3kb2.jpg|left|200px]]
 
-
<!--
+
==Crystal Structure of YorR protein in complex with phosphorylated GDP from Bacillus subtilis, Northeast Structural Genomics Consortium Target SR256==
-
The line below this paragraph, containing "STRUCTURE_3kb2", creates the "Structure Box" on the page.
+
<StructureSection load='3kb2' size='340' side='right'caption='[[3kb2]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3kb2]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KB2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KB2 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=G3D:GUANOSINE-3-MONOPHOSPHATE-5-DIPHOSPHATE'>G3D</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3kb2| PDB=3kb2 | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BSU20280, yorR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kb2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kb2 OCA], [http://pdbe.org/3kb2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3kb2 RCSB], [http://www.ebi.ac.uk/pdbsum/3kb2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3kb2 ProSAT]</span></td></tr>
-
===Crystal Structure of YorR protein in complex with phosphorylated GDP from Bacillus subtilis, Northeast Structural Genomics Consortium Target SR256===
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3KB2 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KB2 OCA].
+
<jmolCheckbox>
-
[[Category: Bacillus subtilis]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kb/3kb2_consurf.spt"</scriptWhenChecked>
-
[[Category: Acton, T B.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Cunningham,K.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Everett, J K.]]
+
</jmolCheckbox>
-
[[Category: Forouhar,F.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kb2 ConSurf].
-
[[Category: Friedman, D.]]
+
<div style="clear:both"></div>
-
[[Category: Ho,C.]]
+
__TOC__
-
[[Category: Hunt,J F.]]
+
</StructureSection>
-
[[Category: Janjua,J.]]
+
[[Category: Vibrio subtilis ehrenberg 1835]]
-
[[Category: Ma,L.]]
+
[[Category: Large Structures]]
-
[[Category: Montelione, G T.]]
+
[[Category: Acton, T B]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Cunningham, K]]
-
[[Category: Nair, R.]]
+
[[Category: Everett, J K]]
-
[[Category: Rost, B.]]
+
[[Category: Forouhar, F]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Friedman, D]]
-
[[Category: Tong,L.]]
+
[[Category: Ho, C]]
-
[[Category: Xiao,R.]]
+
[[Category: Hunt, J F]]
-
[[Category: Alpha-beta protein.]]
+
[[Category: Janjua, J]]
 +
[[Category: Ma, L]]
 +
[[Category: Montelione, G T]]
 +
[[Category: Structural genomic]]
 +
[[Category: Nair, R]]
 +
[[Category: Rost, B]]
 +
[[Category: Seetharaman, J]]
 +
[[Category: Tong, L]]
 +
[[Category: Xiao, R]]
 +
[[Category: Alpha-beta protein]]
[[Category: Nesg]]
[[Category: Nesg]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
[[Category: Unknown function]]
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 28 14:07:46 2009''
+

Current revision

Crystal Structure of YorR protein in complex with phosphorylated GDP from Bacillus subtilis, Northeast Structural Genomics Consortium Target SR256

PDB ID 3kb2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools