This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3kb2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:07, 17 July 2019) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3kb2| PDB=3kb2 | SCENE= }}
 
-
===Crystal Structure of YorR protein in complex with phosphorylated GDP from Bacillus subtilis, Northeast Structural Genomics Consortium Target SR256===
 
-
==About this Structure==
+
==Crystal Structure of YorR protein in complex with phosphorylated GDP from Bacillus subtilis, Northeast Structural Genomics Consortium Target SR256==
-
[[3kb2]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KB2 OCA].
+
<StructureSection load='3kb2' size='340' side='right'caption='[[3kb2]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
[[Category: Bacillus subtilis]]
+
== Structural highlights ==
-
[[Category: Acton, T B.]]
+
<table><tr><td colspan='2'>[[3kb2]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KB2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KB2 FirstGlance]. <br>
-
[[Category: Cunningham,K.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=G3D:GUANOSINE-3-MONOPHOSPHATE-5-DIPHOSPHATE'>G3D</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
[[Category: Everett, J K.]]
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Forouhar,F.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BSU20280, yorR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
-
[[Category: Friedman, D.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kb2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kb2 OCA], [http://pdbe.org/3kb2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3kb2 RCSB], [http://www.ebi.ac.uk/pdbsum/3kb2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3kb2 ProSAT]</span></td></tr>
-
[[Category: Ho,C.]]
+
</table>
-
[[Category: Hunt,J F.]]
+
== Evolutionary Conservation ==
-
[[Category: Janjua,J.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Ma,L.]]
+
Check<jmol>
-
[[Category: Montelione, G T.]]
+
<jmolCheckbox>
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kb/3kb2_consurf.spt"</scriptWhenChecked>
-
[[Category: Nair, R.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Rost, B.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Seetharaman, J.]]
+
</jmolCheckbox>
-
[[Category: Tong,L.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kb2 ConSurf].
-
[[Category: Xiao,R.]]
+
<div style="clear:both"></div>
-
[[Category: Alpha-beta protein.]]
+
__TOC__
-
[[Category: Nesg]]
+
</StructureSection>
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: Vibrio subtilis ehrenberg 1835]]
-
[[Category: Protein structure initiative]]
+
[[Category: Large Structures]]
-
[[Category: Psi-2]]
+
[[Category: Acton, T B]]
 +
[[Category: Cunningham, K]]
 +
[[Category: Everett, J K]]
 +
[[Category: Forouhar, F]]
 +
[[Category: Friedman, D]]
 +
[[Category: Ho, C]]
 +
[[Category: Hunt, J F]]
 +
[[Category: Janjua, J]]
 +
[[Category: Ma, L]]
 +
[[Category: Montelione, G T]]
[[Category: Structural genomic]]
[[Category: Structural genomic]]
 +
[[Category: Nair, R]]
 +
[[Category: Rost, B]]
 +
[[Category: Seetharaman, J]]
 +
[[Category: Tong, L]]
 +
[[Category: Xiao, R]]
 +
[[Category: Alpha-beta protein]]
 +
[[Category: Nesg]]
 +
[[Category: PSI, Protein structure initiative]]
[[Category: Unknown function]]
[[Category: Unknown function]]

Current revision

Crystal Structure of YorR protein in complex with phosphorylated GDP from Bacillus subtilis, Northeast Structural Genomics Consortium Target SR256

PDB ID 3kb2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3kb2"
Personal tools