This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3lm6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3lm6" [edit=sysop:move=sysop])
Current revision (11:13, 17 July 2019) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3lm6| PDB=3lm6 | SCENE= }}
 
-
===Crystal Structure of Stage V sporulation protein AD (spoVAD) from Bacillus subtilis, Northeast Structural Genomics Consortium Target SR525===
 
-
==About this Structure==
+
==Crystal Structure of Stage V sporulation protein AD (spoVAD) from Bacillus subtilis, Northeast Structural Genomics Consortium Target SR525==
-
[[3lm6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis Bacillus subtilis subsp. subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LM6 OCA].
+
<StructureSection load='3lm6' size='340' side='right'caption='[[3lm6]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
[[Category: Bacillus subtilis subsp. subtilis]]
+
== Structural highlights ==
-
[[Category: Acton, T B.]]
+
<table><tr><td colspan='2'>[[3lm6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacsu Bacsu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LM6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LM6 FirstGlance]. <br>
-
[[Category: Cunningham, K.]]
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Everett, J K.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BSU23410, spoVAD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224308 BACSU])</td></tr>
-
[[Category: Fang, F.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lm6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lm6 OCA], [http://pdbe.org/3lm6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lm6 RCSB], [http://www.ebi.ac.uk/pdbsum/3lm6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lm6 ProSAT]</span></td></tr>
-
[[Category: Forouhar, F.]]
+
</table>
-
[[Category: Hunt, J F.]]
+
== Evolutionary Conservation ==
-
[[Category: Ma, L.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Montelione, G T.]]
+
Check<jmol>
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
<jmolCheckbox>
-
[[Category: Nair, R.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lm/3lm6_consurf.spt"</scriptWhenChecked>
-
[[Category: Rost, B.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Seetharaman, J.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Su, M.]]
+
</jmolCheckbox>
-
[[Category: Tong, L.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lm6 ConSurf].
-
[[Category: Wang, D.]]
+
<div style="clear:both"></div>
-
[[Category: Xiao, R.]]
+
__TOC__
-
[[Category: Alpha-beta protein.]]
+
</StructureSection>
 +
[[Category: Bacsu]]
 +
[[Category: Large Structures]]
 +
[[Category: Acton, T B]]
 +
[[Category: Cunningham, K]]
 +
[[Category: Everett, J K]]
 +
[[Category: Fang, F]]
 +
[[Category: Forouhar, F]]
 +
[[Category: Hunt, J F]]
 +
[[Category: Ma, L]]
 +
[[Category: Montelione, G T]]
 +
[[Category: Structural genomic]]
 +
[[Category: Nair, R]]
 +
[[Category: Rost, B]]
 +
[[Category: Seetharaman, J]]
 +
[[Category: Su, M]]
 +
[[Category: Tong, L]]
 +
[[Category: Wang, D]]
 +
[[Category: Xiao, R]]
 +
[[Category: Alpha-beta protein]]
[[Category: Membrane protein]]
[[Category: Membrane protein]]
[[Category: Nesg]]
[[Category: Nesg]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
[[Category: Sporulation]]
[[Category: Sporulation]]
-
[[Category: Structural genomic]]
 

Current revision

Crystal Structure of Stage V sporulation protein AD (spoVAD) from Bacillus subtilis, Northeast Structural Genomics Consortium Target SR525

PDB ID 3lm6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools