This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3lml
From Proteopedia
(Difference between revisions)
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==Crystal Structure of the sheath tail protein Lin1278 from Listeria innocua, Northeast Structural Genomics Consortium Target LkR115== | ==Crystal Structure of the sheath tail protein Lin1278 from Listeria innocua, Northeast Structural Genomics Consortium Target LkR115== | ||
| - | <StructureSection load='3lml' size='340' side='right' caption='[[3lml]], [[Resolution|resolution]] 3.30Å' scene=''> | + | <StructureSection load='3lml' size='340' side='right'caption='[[3lml]], [[Resolution|resolution]] 3.30Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3lml]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[3lml]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/"listeria_innocua"_seeliger_and_schoofs_1979 "listeria innocua" seeliger and schoofs 1979]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LML OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LML FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lin1278 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1642 Listeria innocua])</td></tr> | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lin1278 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1642 "Listeria innocua" Seeliger and Schoofs 1979])</td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lml FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lml OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3lml RCSB], [http://www.ebi.ac.uk/pdbsum/3lml PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lml FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lml OCA], [http://pdbe.org/3lml PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lml RCSB], [http://www.ebi.ac.uk/pdbsum/3lml PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lml ProSAT]</span></td></tr> |
| - | <table> | + | </table> |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lm/3lml_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lm/3lml_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lml ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
| Line 22: | Line 23: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Listeria innocua]] | + | [[Category: Listeria innocua seeliger and schoofs 1979]] |
| - | [[Category: Acton, T B | + | [[Category: Large Structures]] |
| - | [[Category: Ciccosanti, C | + | [[Category: Acton, T B]] |
| - | [[Category: Everett, J K | + | [[Category: Ciccosanti, C]] |
| - | [[Category: Forouhar, F | + | [[Category: Everett, J K]] |
| - | [[Category: Hunt, J F | + | [[Category: Forouhar, F]] |
| - | [[Category: Mao, M | + | [[Category: Hunt, J F]] |
| - | [[Category: Montelione, G T | + | [[Category: Mao, M]] |
| - | [[Category: | + | [[Category: Montelione, G T]] |
| - | [[Category: Nair, R | + | [[Category: Structural genomic]] |
| - | [[Category: Neely, H | + | [[Category: Nair, R]] |
| - | [[Category: Patel, D J | + | [[Category: Neely, H]] |
| - | [[Category: Rost, B | + | [[Category: Patel, D J]] |
| - | [[Category: Seetharaman, J | + | [[Category: Rost, B]] |
| - | [[Category: Tong, L | + | [[Category: Seetharaman, J]] |
| - | [[Category: Wang, H | + | [[Category: Tong, L]] |
| - | [[Category: Xiao, R | + | [[Category: Wang, H]] |
| + | [[Category: Xiao, R]] | ||
[[Category: Lkr115]] | [[Category: Lkr115]] | ||
[[Category: Nesg]] | [[Category: Nesg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
| - | + | ||
[[Category: Unknown function]] | [[Category: Unknown function]] | ||
Current revision
Crystal Structure of the sheath tail protein Lin1278 from Listeria innocua, Northeast Structural Genomics Consortium Target LkR115
| |||||||||||
Categories: Listeria innocua seeliger and schoofs 1979 | Large Structures | Acton, T B | Ciccosanti, C | Everett, J K | Forouhar, F | Hunt, J F | Mao, M | Montelione, G T | Structural genomic | Nair, R | Neely, H | Patel, D J | Rost, B | Seetharaman, J | Tong, L | Wang, H | Xiao, R | Lkr115 | Nesg | PSI, Protein structure initiative | Unknown function
