This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3lyu
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 3lyu is ON HOLD Authors: Forouhar,F., Abashidze,M., Seetharaman, J., Sahdev,S., Xiao,R., Foote,E.L., Ciccosanti,C., Belote,R.L., Everett J.K., Nair,...) |
|||
| (6 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==Crystal Structure of the C-terminal domain (residues 83-215) of PF1911 hydrogenase from Pyrococcus furiosus, Northeast Structural Genomics Consortium Target PfR246A== | |
| - | + | <StructureSection load='3lyu' size='340' side='right'caption='[[3lyu]], [[Resolution|resolution]] 2.30Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3lyu]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LYU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LYU FirstGlance]. <br> | |
| - | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PF1911 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2261 ATCC 43587])</td></tr> | |
| - | '' | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lyu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lyu OCA], [http://pdbe.org/3lyu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lyu RCSB], [http://www.ebi.ac.uk/pdbsum/3lyu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lyu ProSAT]</span></td></tr> |
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ly/3lyu_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lyu ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Atcc 43587]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Abashidze, M]] | ||
| + | [[Category: Acton, T B]] | ||
| + | [[Category: Belote, R L]] | ||
| + | [[Category: Ciccosanti, C]] | ||
| + | [[Category: Everett, J K]] | ||
| + | [[Category: Foote, E L]] | ||
| + | [[Category: Forouhar, F]] | ||
| + | [[Category: Hunt, J F]] | ||
| + | [[Category: Montelione, G T]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Nair, R]] | ||
| + | [[Category: Rost, B]] | ||
| + | [[Category: Sahdev, S]] | ||
| + | [[Category: Seetharaman, J]] | ||
| + | [[Category: Tong, L]] | ||
| + | [[Category: Xiao, R]] | ||
| + | [[Category: Nesg]] | ||
| + | [[Category: Oxidoreductase]] | ||
| + | [[Category: PSI, Protein structure initiative]] | ||
| + | [[Category: The c-terminal has an alpha-beta fold]] | ||
Current revision
Crystal Structure of the C-terminal domain (residues 83-215) of PF1911 hydrogenase from Pyrococcus furiosus, Northeast Structural Genomics Consortium Target PfR246A
| |||||||||||
Categories: Atcc 43587 | Large Structures | Abashidze, M | Acton, T B | Belote, R L | Ciccosanti, C | Everett, J K | Foote, E L | Forouhar, F | Hunt, J F | Montelione, G T | Structural genomic | Nair, R | Rost, B | Sahdev, S | Seetharaman, J | Tong, L | Xiao, R | Nesg | Oxidoreductase | PSI, Protein structure initiative | The c-terminal has an alpha-beta fold
