This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3coq
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Structural Basis for Dimerization in DNA Recognition by Gal4== | ==Structural Basis for Dimerization in DNA Recognition by Gal4== | ||
| - | <StructureSection load='3coq' size='340' side='right' caption='[[3coq]], [[Resolution|resolution]] 2.40Å' scene=''> | + | <StructureSection load='3coq' size='340' side='right'caption='[[3coq]], [[Resolution|resolution]] 2.40Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3coq]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[3coq]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3COQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3COQ FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GAL4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id= | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GAL4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast])</td></tr> |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3coq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3coq OCA], [http://pdbe.org/3coq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3coq RCSB], [http://www.ebi.ac.uk/pdbsum/3coq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3coq ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3coq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3coq OCA], [http://pdbe.org/3coq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3coq RCSB], [http://www.ebi.ac.uk/pdbsum/3coq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3coq ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| Line 14: | Line 14: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/co/3coq_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/co/3coq_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
| Line 31: | Line 31: | ||
==See Also== | ==See Also== | ||
| + | *[[Gal3-Gal80-Gal4|Gal3-Gal80-Gal4]] | ||
*[[User:Wayne Decatur/Gal 4|User:Wayne Decatur/Gal 4]] | *[[User:Wayne Decatur/Gal 4|User:Wayne Decatur/Gal 4]] | ||
== References == | == References == | ||
| Line 36: | Line 37: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Baker's yeast]] |
| + | [[Category: Large Structures]] | ||
[[Category: Fitzgerald, M X]] | [[Category: Fitzgerald, M X]] | ||
[[Category: Harper, S]] | [[Category: Harper, S]] | ||
Revision as of 07:54, 24 July 2019
Structural Basis for Dimerization in DNA Recognition by Gal4
| |||||||||||
Categories: Baker's yeast | Large Structures | Fitzgerald, M X | Harper, S | Hong, M | Luo, C | Speicher, D W | Activator | Carbohydrate metabolism | Dna-binding | Galactose metabolism | Helix bundle | Metal-binding | Nucleus | Phosphoprotein | Protein-dna complex | Transcription | Transcription regulation | Transcription-dna complex | Zinc binuclear cluster
