This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3jvn
From Proteopedia
(Difference between revisions)
m (Protected "3jvn" [edit=sysop:move=sysop]) |
|||
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_3jvn| PDB=3jvn | SCENE= }} | ||
| - | ===Crystal Structure of the acetyltransferase VF_1542 from Vibrio fischeri, Northeast Structural Genomics Consortium Target VfR136=== | ||
| - | == | + | ==Crystal Structure of the acetyltransferase VF_1542 from Vibrio fischeri, Northeast Structural Genomics Consortium Target VfR136== |
| - | [[3jvn]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <StructureSection load='3jvn' size='340' side='right'caption='[[3jvn]], [[Resolution|resolution]] 2.61Å' scene=''> |
| - | [[Category: | + | == Structural highlights == |
| - | [[Category: Acton, T B | + | <table><tr><td colspan='2'>[[3jvn]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Alif1 Alif1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JVN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3JVN FirstGlance]. <br> |
| - | [[Category: Ciccosanti,C | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | [[Category: Everett, J K | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[Category: Forouhar, F | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VF_1542 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=312309 ALIF1])</td></tr> |
| - | [[Category: Hunt, J F | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3jvn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jvn OCA], [http://pdbe.org/3jvn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3jvn RCSB], [http://www.ebi.ac.uk/pdbsum/3jvn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3jvn ProSAT]</span></td></tr> |
| - | [[Category: Mao, M | + | </table> |
| - | [[Category: Montelione, G T | + | == Evolutionary Conservation == |
| - | [[Category: | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: Nair, R | + | Check<jmol> |
| - | [[Category: Neely, H | + | <jmolCheckbox> |
| - | [[Category: Rost, B | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jv/3jvn_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Seetharaman, J | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Tong, L | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Xiao, R | + | </jmolCheckbox> |
| - | [[Category: Zhao, L | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3jvn ConSurf]. |
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Alif1]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Acton, T B]] | ||
| + | [[Category: Ciccosanti, C]] | ||
| + | [[Category: Everett, J K]] | ||
| + | [[Category: Forouhar, F]] | ||
| + | [[Category: Hunt, J F]] | ||
| + | [[Category: Mao, M]] | ||
| + | [[Category: Montelione, G T]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Nair, R]] | ||
| + | [[Category: Neely, H]] | ||
| + | [[Category: Rost, B]] | ||
| + | [[Category: Seetharaman, J]] | ||
| + | [[Category: Tong, L]] | ||
| + | [[Category: Xiao, R]] | ||
| + | [[Category: Zhao, L]] | ||
[[Category: Acyltransferase]] | [[Category: Acyltransferase]] | ||
[[Category: Alpha-beta protein]] | [[Category: Alpha-beta protein]] | ||
[[Category: Nesg]] | [[Category: Nesg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
| - | + | ||
[[Category: Transferase]] | [[Category: Transferase]] | ||
Current revision
Crystal Structure of the acetyltransferase VF_1542 from Vibrio fischeri, Northeast Structural Genomics Consortium Target VfR136
| |||||||||||
Categories: Alif1 | Large Structures | Acton, T B | Ciccosanti, C | Everett, J K | Forouhar, F | Hunt, J F | Mao, M | Montelione, G T | Structural genomic | Nair, R | Neely, H | Rost, B | Seetharaman, J | Tong, L | Xiao, R | Zhao, L | Acyltransferase | Alpha-beta protein | Nesg | PSI, Protein structure initiative | Transferase
