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6qgt
From Proteopedia
(Difference between revisions)
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| - | '''Unreleased structure''' | ||
| - | The | + | ==The carbon monoxide inhibition of F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri== |
| + | <StructureSection load='6qgt' size='340' side='right'caption='[[6qgt]], [[Resolution|resolution]] 1.99Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[6qgt]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanosarcina_barkeri_ms Methanosarcina barkeri ms]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QGT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6QGT FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=144:TRIS-HYDROXYMETHYL-METHYL-AMMONIUM'>144</scene>, <scene name='pdbligand=BU3:(R,R)-2,3-BUTANEDIOL'>BU3</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=J52:dicyano-(oxidaniumylidynemethylnickelio)-(oxidanylidenemethylidene)iron'>J52</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr> | ||
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Coenzyme_F420_hydrogenase Coenzyme F420 hydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.12.98.1 1.12.98.1] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6qgt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qgt OCA], [http://pdbe.org/6qgt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qgt RCSB], [http://www.ebi.ac.uk/pdbsum/6qgt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qgt ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | [NiFe] hydrogenases are complex model enzymes for the reversible cleavage of dihydrogen (H 2 ). However, structural determinants of efficient H 2 binding to their [NiFe] active site are not properly understood. Here, we present crystallographic and vibrational spectroscopic insights into the unexplored structure of the H 2 -binding [NiFe] intermediate. Using an F 420 -reducing [NiFe]-hydrogenase from Methanosarcina barkeri as a model enzyme, we show that the protein backbone provides a strained chelating scaffold that tunes the [NiFe] active site for efficient H 2 binding and conversion. The protein matrix also directs H 2 diffusion to the [NiFe] site via two gas channels and allows the distribution of electrons between functional protomers through a subunit-bridging FeS cluster. Our findings emphasize the relevance of an atypical Ni coordination, thereby providing a blueprint for the design of bio-inspired H 2 conversion catalysts. | ||
| - | + | X-ray Crystallography and Vibrational Spectroscopy Reveal Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] hydrogenases.,Ilina Y, Lorent C, Katz S, Jeoung JH, Shima S, Horch M, Zebger I, Dobbek H Angew Chem Int Ed Engl. 2019 Oct 7. doi: 10.1002/anie.201908258. PMID:31591784<ref>PMID:31591784</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| + | <div class="pdbe-citations 6qgt" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Coenzyme F420 hydrogenase]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Methanosarcina barkeri ms]] | ||
[[Category: Dobbek, H]] | [[Category: Dobbek, H]] | ||
| - | [[Category: Ilina, Y]] | ||
| - | [[Category: Shima, S]] | ||
[[Category: Horch, M]] | [[Category: Horch, M]] | ||
| - | [[Category: Jeoung, J | + | [[Category: Ilina, Y]] |
| + | [[Category: Jeoung, J H]] | ||
[[Category: Katz, S]] | [[Category: Katz, S]] | ||
| - | [[Category: Zebger, I]] | ||
[[Category: Lorent, C]] | [[Category: Lorent, C]] | ||
| + | [[Category: Shima, S]] | ||
| + | [[Category: Zebger, I]] | ||
| + | [[Category: Metal binding protein]] | ||
| + | [[Category: Methanogenic acetoclastic archaea]] | ||
| + | [[Category: Oxidoreductase]] | ||
| + | [[Category: Oxygen sensitive]] | ||
| + | [[Category: Reversible oxidation of dihydrogen]] | ||
Revision as of 07:01, 23 October 2019
The carbon monoxide inhibition of F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri
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Categories: Coenzyme F420 hydrogenase | Large Structures | Methanosarcina barkeri ms | Dobbek, H | Horch, M | Ilina, Y | Jeoung, J H | Katz, S | Lorent, C | Shima, S | Zebger, I | Metal binding protein | Methanogenic acetoclastic archaea | Oxidoreductase | Oxygen sensitive | Reversible oxidation of dihydrogen
