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6fhy

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(New page: '''Unreleased structure''' The entry 6fhy is ON HOLD until sometime in the future Authors: Houser, J., Jancarikova, G., Kasakova, M., Wimmerova, M., Moravcova, J. Description: Photorha...)
Current revision (09:28, 30 October 2019) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 6fhy is ON HOLD until sometime in the future
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==Photorhabdus asymbiotica lectin (PHL) in complex with synthetic C-fucoside==
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<StructureSection load='6fhy' size='340' side='right'caption='[[6fhy]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6fhy]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43950 Atcc 43950]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FHY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FHY FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DS8:(2~{S},3~{S},4~{R},5~{S},6~{S})-2-[[(2~{S},4~{R},6~{R})-2-(hydroxymethyl)-6-oxidanyl-oxan-4-yl]methyl]-6-methyl-oxane-3,4,5-triol'>DS8</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PAU_00698 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=291112 ATCC 43950])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6fhy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fhy OCA], [http://pdbe.org/6fhy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6fhy RCSB], [http://www.ebi.ac.uk/pdbsum/6fhy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6fhy ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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A recently described bangle lectin (PHL) from the bacterium Photorhabdus asymbiotica was identified as a mainly fucose-binding protein that could play an important role in the host-pathogen interaction and in the modulation of host immune response. Structural studies showed that PHL is a homo-dimer that contains up to seven L-fucose-specific binding sites per monomer. For these reasons, potential ligands of the PHL lectin: alpha-L-fucopyranosyl-containing mono-, di-, tetra-, hexa- and dodecavalent ligands were tested. Two types of polyvalent structures were investigated - calix[4]arenes and dendrimers. The shared feature of all these structures was a C-glycosidic bond instead of the more common but physiologically unstable O-glycosidic bond. The inhibition potential of the tested structures was assessed using different techniques - hemagglutination, surface plasmon resonance, isothermal titration calorimetry, and cell cross-linking. All the ligands proved to be better than free L-fucose. The most active hexavalent dendrimer exhibited affinity three orders of magnitude higher than that of standard L-fucose. To determine the binding mode of some ligands, crystal complex PHL/fucosides 2 - 4 were prepared and studied using X-ray crystallography. The electron density in complexes proved the presence of the compounds in 6 out of 7 fucose-binding sites.
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Authors: Houser, J., Jancarikova, G., Kasakova, M., Wimmerova, M., Moravcova, J.
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Fucosylated inhibitors of recently identified bangle lectin from Photorhabdus asymbiotica.,Paulikova G, Houser J, Kasakova M, Oroszova B, Bertolotti B, Parkan K, Moravcova J, Wimmerova M Sci Rep. 2019 Oct 17;9(1):14904. doi: 10.1038/s41598-019-51357-9. PMID:31624296<ref>PMID:31624296</ref>
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Description: Photorhabdus asymbiotica lectin (PHL) in complex with synthetic C-fucoside
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Wimmerova, M]]
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<div class="pdbe-citations 6fhy" style="background-color:#fffaf0;"></div>
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[[Category: Jancarikova, G]]
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== References ==
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[[Category: Moravcova, J]]
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Atcc 43950]]
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[[Category: Large Structures]]
[[Category: Houser, J]]
[[Category: Houser, J]]
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[[Category: Kasakova, M]]
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[[Category: Jancarikova, G]]
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[[Category: Wimmerova, M]]
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[[Category: C-fucoside]]
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[[Category: Lectin]]
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[[Category: Seven-bladed beta-propeller]]
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[[Category: Sugar binding protein]]

Current revision

Photorhabdus asymbiotica lectin (PHL) in complex with synthetic C-fucoside

PDB ID 6fhy

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