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3k5w
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 3k5w is ON HOLD Authors: Satyanarayana,L., Burley,S.K., Swaminathan,S. Description: Crystal structure of a Carbohydrate kinase (YjeF family)from He...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of a Carbohydrate kinase (YjeF family)from Helicobacter pylori== | |
| - | + | <StructureSection load='3k5w' size='340' side='right'caption='[[3k5w]], [[Resolution|resolution]] 2.60Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3k5w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43504 Atcc 43504]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K5W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3K5W FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | |
| - | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | '' | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">900323 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=210 ATCC 43504])</td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3k5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k5w OCA], [http://pdbe.org/3k5w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3k5w RCSB], [http://www.ebi.ac.uk/pdbsum/3k5w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3k5w ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [[http://www.uniprot.org/uniprot/NNR_HELPY NNR_HELPY]] Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration (By similarity). | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k5/3k5w_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3k5w ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Atcc 43504]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Burley, S K]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Satyanarayana, L]] | ||
| + | [[Category: Swaminathan, S]] | ||
| + | [[Category: Carbohydrate kinase]] | ||
| + | [[Category: Helicobacter pylori]] | ||
| + | [[Category: Kinase]] | ||
| + | [[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]] | ||
| + | [[Category: Pfkb family]] | ||
| + | [[Category: PSI, Protein structure initiative]] | ||
| + | [[Category: Sad]] | ||
| + | [[Category: Transferase]] | ||
Current revision
Crystal structure of a Carbohydrate kinase (YjeF family)from Helicobacter pylori
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