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6i4a

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'''Unreleased structure'''
 
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The entry 6i4a is ON HOLD until Paper Publication
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==Structure of P. aeruginosa LpxC with compound 18d: (2R)-N-Hydroxy-4-(6-((1-(hydroxymethyl)cyclopropyl)buta-1,3-diyn-1-yl)-3-oxo-1H-pyrrolo[1,2-c]imidazol-2(3H)-yl)-2-methyl-2-(methylsulfonyl)butanamide==
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<StructureSection load='6i4a' size='340' side='right'caption='[[6i4a]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6i4a]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6I4A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6I4A FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=H2Q:(2~{R})-4-[6-[4-[1-(hydroxymethyl)cyclopropyl]buta-1,3-diynyl]-3-oxidanylidene-1~{H}-pyrrolo[1,2-c]imidazol-2-yl]-2-methyl-2-methylsulfonyl-~{N}-oxidanyl-butanamide'>H2Q</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/UDP-3-O-acyl-N-acetylglucosamine_deacetylase UDP-3-O-acyl-N-acetylglucosamine deacetylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.108 3.5.1.108] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6i4a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6i4a OCA], [http://pdbe.org/6i4a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6i4a RCSB], [http://www.ebi.ac.uk/pdbsum/6i4a PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6i4a ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/LPXC_PSEA8 LPXC_PSEA8]] Catalyzes the hydrolysis of UDP-3-O-myristoyl-N-acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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UDP-3-O-((R)-3-hydroxymyristoyl)-N-glucosamine deacetylase (LpxC) is as an attractive target for the discovery and development of novel antibacterial drugs to address the critical medical need created by multi-drug resistant Gram-negative bacteria. Using a scaffold hopping approach on a known family of methylsulfone hydroxamate LpxC inhibitors, several hit series eliciting potent antibacterial activities against Enterobacteriaceae and Pseudomonas aeruginosa were identified. Subsequent hit-to-lead optimization, using co-crystal structures of inhibitors bound to Pseudomonas aeruginosa LpxC as guides, resulted in the discovery of multiple chemical series based on i) isoindolin-1-ones, ii) 4,5-dihydro-6H-thieno[2,3-c]pyrrol-6-ones and iii) 1,2-dihydro-3H-pyrrolo[1,2-c]imidazole-3-ones. Synthetic methods, antibacterial activities and relative binding affinities, as well as physico-chemical properties that allowed compound prioritization are presented. Finally, in vivo properties of lead molecules which belong to the most promising pyrrolo-imidazolone series such as 18d, are discussed.
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Authors: Surivet, J.-P., Panchaud, P., Specklin, J.-L., Diethelm, S., Blumstein, A.-C., Gauvin, J.-C., Jacob, L., Masse, F., Mathieu, G., Mirre, A., Schmitt, C., Enderlin-Paput, M., Lange, R., Bur, D., Tidten-Luksch, N., Gnerre, C., Seeland, S., Hermann, C., Locher, H.H., Seiler, P., Mac Sweeney, A., Hubschwerlen, C., Ritz, D., Rueedi, G.
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Discovery of Novel Inhibitors of LpxC Displaying Potent In Vitro Activity against Gram-Negative Bacteria.,Surivet JP, Panchaud P, Specklin JL, Diethelm S, Blumstein AC, Gauvin JC, Jacob L, Masse F, Mathieu G, Mirre A, Schmitt C, Lange R, Tidten-Luksch N, Gnerre C, Seeland S, Herrmann C, Seiler P, Enderlin-Paput M, Mac Sweeney A, Wicki M, Hubschwerlen C, Ritz D, Rueedi G J Med Chem. 2019 Dec 5. doi: 10.1021/acs.jmedchem.9b01604. PMID:31804826<ref>PMID:31804826</ref>
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Description: Structure of P. aeruginosa LpxC with compound 18d: (2R)-N-Hydroxy-4-(6-((1-(hydroxymethyl)cyclopropyl)buta-1,3-diyn-1-yl)-3-oxo-1H-pyrrolo[1,2-c]imidazol-2(3H)-yl)-2-methyl-2-(methylsulfonyl)butanamide
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Gauvin, J.-C]]
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<div class="pdbe-citations 6i4a" style="background-color:#fffaf0;"></div>
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[[Category: Hubschwerlen, C]]
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== References ==
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[[Category: Specklin, J.-L]]
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<references/>
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[[Category: Jacob, L]]
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__TOC__
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[[Category: Schmitt, C]]
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</StructureSection>
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[[Category: Rueedi, G]]
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[[Category: Large Structures]]
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[[Category: Hermann, C]]
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[[Category: UDP-3-O-acyl-N-acetylglucosamine deacetylase]]
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[[Category: Enderlin-Paput, M]]
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[[Category: Blumstein, A C]]
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[[Category: Surivet, J.-P]]
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[[Category: Bur, D]]
[[Category: Bur, D]]
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[[Category: Mirre, A]]
 
[[Category: Diethelm, S]]
[[Category: Diethelm, S]]
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[[Category: Seiler, P]]
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[[Category: Enderlin-Paput, M]]
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[[Category: Tidten-Luksch, N]]
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[[Category: Gauvin, J C]]
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[[Category: Mac Sweeney, A]]
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[[Category: Gnerre, C]]
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[[Category: Seeland, S]]
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[[Category: Hermann, C]]
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[[Category: Hubschwerlen, C]]
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[[Category: Jacob, L]]
[[Category: Lange, R]]
[[Category: Lange, R]]
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[[Category: Ritz, D]]
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[[Category: Locher, H H]]
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[[Category: Mathieu, G]]
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[[Category: Locher, H.H]]
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[[Category: Masse, F]]
[[Category: Masse, F]]
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[[Category: Blumstein, A.-C]]
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[[Category: Mathieu, G]]
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[[Category: Gnerre, C]]
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[[Category: Mirre, A]]
[[Category: Panchaud, P]]
[[Category: Panchaud, P]]
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[[Category: Ritz, D]]
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[[Category: Rueedi, G]]
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[[Category: Schmitt, C]]
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[[Category: Seeland, S]]
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[[Category: Seiler, P]]
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[[Category: Specklin, J L]]
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[[Category: Surivet, J P]]
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[[Category: Sweeney, A Mac]]
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[[Category: Tidten-Luksch, N]]
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[[Category: Hydrolase]]
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[[Category: Inhibitor]]

Revision as of 07:38, 18 December 2019

Structure of P. aeruginosa LpxC with compound 18d: (2R)-N-Hydroxy-4-(6-((1-(hydroxymethyl)cyclopropyl)buta-1,3-diyn-1-yl)-3-oxo-1H-pyrrolo[1,2-c]imidazol-2(3H)-yl)-2-methyl-2-(methylsulfonyl)butanamide

PDB ID 6i4a

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