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Ribosome 3D structures

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Line 31: Line 31:
**[[1ibk]] - Tt30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA<br />
**[[1ibk]] - Tt30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA<br />
**[[2om7]] – TtRPS2+TtRPS12+TtRPL1+ P-site tRNA+16S RRNA fragment+23S RRNA fragment<br />
**[[2om7]] – TtRPS2+TtRPS12+TtRPL1+ P-site tRNA+16S RRNA fragment+23S RRNA fragment<br />
-
**[[5u4j]] – EcRPS3+EcRPS4+EcRPS5 + EcRPS12 + P-site tRNA+16S RRNA +23S RRNA + mRNA + RF-2 – Cryo EM<br />
+
**[[5u4j]] – EcRPS3+EcRPS4+EcRPS5 + EcRPS12 + P-site tRNA+16S RRNA +23S RRNA + mRNA + RF-2 – Escherichia coli – Cryo EM<br />
*30S subunit+A-site tRNA+P-site tRNA
*30S subunit+A-site tRNA+P-site tRNA
Line 71: Line 71:
*40S ribosomal subunit
*40S ribosomal subunit
-
**[[4v5o]] - Tet40S ribosomal subunit+RACK1 – ''Tetrahymena thermophila''<br />
+
**[[6g4w]] - h40S ribosomal subunit + PNO1 + bystin + TSR1 + tRNA methyltransferase – Cryo-EM<br />
**[[4kzx]] - r40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM<br />
**[[4kzx]] - r40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM<br />
**[[4kzy]] - r40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM<br />
**[[4kzy]] - r40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM<br />
**[[4kzz]] - r40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM<br />
**[[4kzz]] - r40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM<br />
**[[4bts]] - r40S ribosomal subunit+ 18SRRNA + EIF1 + EIF1A <br />
**[[4bts]] - r40S ribosomal subunit+ 18SRRNA + EIF1 + EIF1A <br />
-
**[[6g4w]] - h40S ribosomal subunit + PNO1 + bystin + TSR1 + tRNA methyltransferase – Cryo-EM<br />
+
**[[6nd4]] - y40S ribosomal subunit – yeast - Cryo-EM<br />
**[[6fai]] - y40S ribosomal subunit + PNO1 + 20S RRNA + TSR1 + LTV1 + RIO2 – Cryo-EM<br />
**[[6fai]] - y40S ribosomal subunit + PNO1 + 20S RRNA + TSR1 + LTV1 + RIO2 – Cryo-EM<br />
**[[6eml]] - y40S ribosomal subunit + PNO1 + 20S RRNA + TSR1 + LTV1 + RIO2 + essential nuclear protein 1 – Cryo-EM<br />
**[[6eml]] - y40S ribosomal subunit + PNO1 + 20S RRNA + TSR1 + LTV1 + RIO2 + essential nuclear protein 1 – Cryo-EM<br />
 +
**[[6rbd]] - y40S ribosomal subunit + PNO1 + 20S RRNA + TSR1 + dimethyladenosine transferase + RIO2 + essential nuclear protein 1 – Cryo-EM<br />
 +
**[[4v5o]] - Tet40S ribosomal subunit+RACK1 – ''Tetrahymena thermophila''<br />
*50S subunit+RNA
*50S subunit+RNA
 +
**[[2ftc]] – 50S subunit+5S RRNA+23S RRNA – bovine - Cryo_EM<br />
**[[4v7l]], [[4v7m]], [[4v8j]], [[4v8n]], [[4v9i]] - Tt50S subunit+5S RRNA+23S RRNA <br />
**[[4v7l]], [[4v7m]], [[4v8j]], [[4v8n]], [[4v9i]] - Tt50S subunit+5S RRNA+23S RRNA <br />
**[[4v6c]] - Ec50S subunit+5S RRNA+23S RRNA <br />
**[[4v6c]] - Ec50S subunit+5S RRNA+23S RRNA <br />
Line 95: Line 98:
**[[1vqo]] – Hm50S subunit+5S RRNA+23S RRNA+ CCPMN<br />
**[[1vqo]] – Hm50S subunit+5S RRNA+23S RRNA+ CCPMN<br />
**[[3iy9]] – 50S subunit – ''Leishmania taretolae''<br />
**[[3iy9]] – 50S subunit – ''Leishmania taretolae''<br />
-
**[[2ftc]] – 50S subunit+5S RRNA+23S RRNA – bovine - Cryo_EM<br />
+
**[[3j3v]], [[3j3w]] - Bs50S subunit+5S RRNA+23S RRNA – ''Bacillus subtilis''<br />
-
**[[3j3v]], [[3j3w]] - 50S subunit+5S RRNA+23S RRNA – ''Bacillus subtilis''<br />
+
*50S subunit + antibiotics
*50S subunit + antibiotics
Line 113: Line 115:
**[[2j28]] - Ec50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM<br />
**[[2j28]] - Ec50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM<br />
**[[1w2b]] - Hm50S subunit+5S RRNA+23S RRNA+trigger factor N-terminal<br />
**[[1w2b]] - Hm50S subunit+5S RRNA+23S RRNA+trigger factor N-terminal<br />
 +
**[[6ppk]] - Bs50S subunit+5S RRNA+23S RRNA + ribosome biogenesis GTPase A – Cryo EM<br />
*60S subunit + various proteins
*60S subunit + various proteins
-
**[[4v8p]] - Tet60S subunit+ 26S RRNA+ translation initiation factor 6 <br />
+
**[[4v6x]] – h60S subunit + P0 + P1 + P2 – human - Cryo EM<br />
 +
**[[2lbf]] – hP1 dimerization domain + P2 dimerization domain - NMR<br />
 +
**[[2w1o]] – hP2 dimerization domain - NMR<br />
 +
**[[4beh]] – hP1 + P2 - NMR<br />
**[[4v6i]] – y60S subunit + P0 + P1 + P2 – yeast - Cryo EM<br />
**[[4v6i]] – y60S subunit + P0 + P1 + P2 – yeast - Cryo EM<br />
**[[4v8t]] – y60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM<br />
**[[4v8t]] – y60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM<br />
Line 123: Line 129:
**[[4v7r]] – y60S subunit + 5S RRNA + 5.8S RRNA + 25S RRNA + P0<br />
**[[4v7r]] – y60S subunit + 5S RRNA + 5.8S RRNA + 25S RRNA + P0<br />
**[[5tzs]], [[5no4]] – y60S subunit processome – Cryo EM<br />
**[[5tzs]], [[5no4]] – y60S subunit processome – Cryo EM<br />
-
**[[5anc]], [[5anb]], [[5an9]] – 60S subunit + P0 + SbdS + EF-Tu – slime mold - Cryo EM<br />
+
**[[5anc]], [[5anb]], [[5an9]] – sm60S subunit + P0 + SbdS + EF-Tu – slime mold - Cryo EM<br />
 +
**[[6qkl]] – sm60S subunit + P0 + SbdS + EIF-6 - Cryo EM<br />
**[[4v6w]] – Dm60S subunit + P0 – Drosophila melanogaster - Cryo EM<br />
**[[4v6w]] – Dm60S subunit + P0 – Drosophila melanogaster - Cryo EM<br />
-
**[[4v6x]] – h60S subunit + P0 + P1 + P2 – human - Cryo EM<br />
+
**[[4v8p]] - Tet60S subunit+ 26S RRNA+ translation initiation factor 6 <br />
-
**[[2lbf]] – hP1 dimerization domain + P2 dimerization domain - NMR<br />
+
-
**[[2w1o]] – hP2 dimerization domain - NMR<br />
+
-
**[[4beh]] – hP1 + P2 - NMR<br />
+
*70S ribosome
*70S ribosome
-
**[[4v4q]], [[4v9d]] - EcRibosome <br />
+
**[[4v61]], [[5x8r]], [[5mlc]] – sRibosome – spinach - Cryo-EM<br />
**[[4v4i]], [[4v83]], [[4v84]], [[4v4s]], [[4v4x]], [[4v4z]], [[4v90]], [[4v42]] – TtRibosome <br />
**[[4v4i]], [[4v83]], [[4v84]], [[4v4s]], [[4v4x]], [[4v4z]], [[4v90]], [[4v42]] – TtRibosome <br />
**[[4v8j]], [[4v97]] – TtRibosome ram mutation<br />
**[[4v8j]], [[4v97]] – TtRibosome ram mutation<br />
**[[4v8n]] – TtRibosome agmatidine mutation<br />
**[[4v8n]] – TtRibosome agmatidine mutation<br />
-
**[[4v6c]], [[4v6d]], [[4v6e]] – EcRibosome ratcheting<br />
 
-
**[[4v69]], [[4v48]], [[4v4a]] – EcRibosome – Cryo-EM<br />
 
-
**[[4v6u]] – Ribosome – Pyrococcus furiosus - Cryo-EM<br />
 
**[[4v4y]], [[4v4j]] – TtRibosome Shine-Dalgarno duplex<br />
**[[4v4y]], [[4v4j]] – TtRibosome Shine-Dalgarno duplex<br />
-
**[[4v4v]] – EcRibosome pre-translocational – Cryo-EM<br />
 
**[[4v5m]] – TtRibosome pre-translocational – Cryo-EM<br />
**[[4v5m]] – TtRibosome pre-translocational – Cryo-EM<br />
**[[4v5n]] – TtRibosome post-translocational – Cryo-EM<br />
**[[4v5n]] – TtRibosome post-translocational – Cryo-EM<br />
 +
**[[4v4q]], [[4v9d]] - EcRibosome <br />
 +
**[[4v6c]], [[4v6d]], [[4v6e]] – EcRibosome ratcheting<br />
 +
**[[4v69]], [[4v48]], [[4v4a]] – EcRibosome – Cryo-EM<br />
 +
**[[4v4v]] – EcRibosome pre-translocational – Cryo-EM<br />
**[[4v4w]] – EcRibosome SecM-stalled – Cryo-EM<br />
**[[4v4w]] – EcRibosome SecM-stalled – Cryo-EM<br />
**[[4v65]] – EcRibosome pre-accomodation – Cryo-EM<br />
**[[4v65]] – EcRibosome pre-accomodation – Cryo-EM<br />
**[[4v66]] – EcRibosome post-accomodation – Cryo-EM<br />
**[[4v66]] – EcRibosome post-accomodation – Cryo-EM<br />
-
**[[4v61]], [[5x8r]], [[5mlc]] – sRibosome – spinach - Cryo-EM<br />
+
**[[4v8m]] - TbRibosome – ''Trypanosoma brucei'' – Cryo-EM<br />
-
**[[4v8m]] - TbRibosome – Trypanosoma brucei – Cryo-EM<br />
+
**[[4v6u]] – Ribosome – ''Pyrococcus furiosus'' - Cryo-EM<br />
*70S ribosome complex with mRNA
*70S ribosome complex with mRNA
Line 172: Line 176:
**[[4v5e]], [[4v4r]], [[4v67]], [[4v9n]] – TtRibosome + RF-2<br />
**[[4v5e]], [[4v4r]], [[4v67]], [[4v9n]] – TtRibosome + RF-2<br />
**[[4v5j]] – TtRibosome + RF-2 + substrate analog<br />
**[[4v5j]] – TtRibosome + RF-2 + substrate analog<br />
 +
**[[4v8o]] – TtRibosome + RF-3<br />
**[[1ml5]] – EcRibosome + RF-2 – Cryo-EM<br />
**[[1ml5]] – EcRibosome + RF-2 – Cryo-EM<br />
**[[4v89]] – EcRibosome + RF-3<br />
**[[4v89]] – EcRibosome + RF-3<br />
**[[4v85]] – EcRibosome + RF-3 + mRNA + antibiotic<br />
**[[4v85]] – EcRibosome + RF-3 + mRNA + antibiotic<br />
-
**[[4v8o]] – TtRibosome + RF-3<br />
 
*70S ribosome complex with various proteins
*70S ribosome complex with various proteins
Line 181: Line 185:
**[[4v5b]] – EcRibosome + PDF-binding helix<br />
**[[4v5b]] – EcRibosome + PDF-binding helix<br />
**[[4v5h]] – EcRibosome + Tnac leader peptide<br />
**[[4v5h]] – EcRibosome + Tnac leader peptide<br />
-
**[[4v5k]] – TtRibosome + colicin E3<br />
 
**[[4v6v]] - EcRibosome+ tetracycline resistance protein + mRNA + P-tRNA – Cryo-EM<br />
**[[4v6v]] - EcRibosome+ tetracycline resistance protein + mRNA + P-tRNA – Cryo-EM<br />
-
**[[4v7j]], [[4v7k]] – TtRibosome + toxin RelE<br />
 
**[[4v6m]] – EcRibosome + SecYE – Cryo-EM<br />
**[[4v6m]] – EcRibosome + SecYE – Cryo-EM<br />
**[[4v4g]] – EcRibosome + protein Y – Cryo-EM<br />
**[[4v4g]] – EcRibosome + protein Y – Cryo-EM<br />
Line 191: Line 193:
**[[4v8i]] - TtRibosome + ribosome-associated inhibitor<br />
**[[4v8i]] - TtRibosome + ribosome-associated inhibitor<br />
**[[4v95]] – TtRibosome + YAEJ<br />
**[[4v95]] – TtRibosome + YAEJ<br />
 +
**[[4v5k]] – TtRibosome + colicin E3<br />
 +
**[[4v7j]], [[4v7k]] – TtRibosome + toxin RelE<br />
*70S ribosome complex with elongation factor
*70S ribosome complex with elongation factor
-
**[[4v5f]], [[4v8u]], [[4v9h]] – TtRibosome + elongation factor G<br />
 
**[[4v9o]] – EcRibosome + elongation factor G<br />
**[[4v9o]] – EcRibosome + elongation factor G<br />
**[[4v9p]] – EcRibosome + antibiotic + elongation factor G<br />
**[[4v9p]] – EcRibosome + antibiotic + elongation factor G<br />
**[[4v47]] – EcRibosome + elongation factor G – Cryo-EM<br />
**[[4v47]] – EcRibosome + elongation factor G – Cryo-EM<br />
**[[4v6t]] – EcRibosome + elongation factor G + tRNA-SmpB – Cryo-EM<br />
**[[4v6t]] – EcRibosome + elongation factor G + tRNA-SmpB – Cryo-EM<br />
-
**[[4v6a]] – TtRibosome + elongation factor P<br />
 
**[[4v6k]], [[4v6l]] – EcRibosome + elongation factor Tu <br />
**[[4v6k]], [[4v6l]] – EcRibosome + elongation factor Tu <br />
**[[4v5l]] – EcRibosome + elongation factor Tu + tRNA<br />
**[[4v5l]] – EcRibosome + elongation factor Tu + tRNA<br />
 +
**[[4v5f]], [[4v8u]], [[4v9h]] – TtRibosome + elongation factor G<br />
 +
**[[4v6a]] – TtRibosome + elongation factor P<br />
**[[4v5g]] – TtRibosome + elongation factor Tu<br />
**[[4v5g]] – TtRibosome + elongation factor Tu<br />
**[[4v8q]] – TtRibosome + antibiotic + elongation factor Tu<br />
**[[4v8q]] – TtRibosome + antibiotic + elongation factor Tu<br />
Line 211: Line 215:
*80S ribosome
*80S ribosome
 +
**[[4v6x]] – hRibosome - Cryo-EM<br />
 +
**[[4v5z]] - dRibosome – Cryo-EM <br />
 +
**[[3j0l]], [[3j0o]], [[3j0p]], [[3j0q]] - rRibosome+ mRNA – Cryo-EM <br />
**[[4v6w]] - DmRibosome + elongation factor 2 + guanine nucleotide-binding protein – Cryo-EM<br />
**[[4v6w]] - DmRibosome + elongation factor 2 + guanine nucleotide-binding protein – Cryo-EM<br />
 +
**[[4v7e]] – Ribosome – wheat - Cryo-EM<br />
**[[4v7r]], [[4v88]] – yRibosome <br />
**[[4v7r]], [[4v88]] – yRibosome <br />
**[[4v6i]] – yRibosome - Cryo-EM<br />
**[[4v6i]] – yRibosome - Cryo-EM<br />
**[[4v4b]] – yRibosome + elongation factor 2 + antifungal - Cryo-EM<br />
**[[4v4b]] – yRibosome + elongation factor 2 + antifungal - Cryo-EM<br />
-
**[[4v7e]] – Ribosome – wheat - Cryo-EM<br />
 
-
**[[4v6x]] – hRibosome - Cryo-EM<br />
 
-
**[[4v5z]] - dRibosome – Cryo-EM <br />
 
-
**[[3j0l]], [[3j0o]], [[3j0p]], [[3j0q]] - rRibosome+ mRNA – Cryo-EM <br />
 
**[[4v7h]] - TlRibosome+P-site tRNA – ''Thermomyces lanuginosus''<br />
**[[4v7h]] - TlRibosome+P-site tRNA – ''Thermomyces lanuginosus''<br />

Revision as of 08:44, 19 December 2019

Updated on 19-December-2019 For a general description of the protein see Ribosome

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