This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Template:Chemical Components
From Proteopedia
(created page) |
|||
| (6 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | A complete list of all compounds in the [[PDB]] is available, including hydrogens, 3D | + | At [http://www.rcsb.org RCSB.Org], using the ''Advanced Search'' and query type ''Chemical ID'', you can find all entries in the database that contain a particular chemical component. For example, in December, 2019, five entries contain PYL (explained in [[Non-Standard Residues]]). |
| + | |||
| + | A complete list of all compounds in the [[PDB]] is available, including hydrogens, 3D structures, and bond orders, in the [http://www.wwpdb.org/ccd.html Chemical Components Dictionary of the Worldwide Protein Data Bank]. This includes all [[Standard Residues]] as well as [[Non-Standard Residues]], carbohydrate adducts, [[Ligands]] and [[Hetero atoms|Hetero Groups]]. It is updated weekly for newly released entries. | ||
Current revision
At RCSB.Org, using the Advanced Search and query type Chemical ID, you can find all entries in the database that contain a particular chemical component. For example, in December, 2019, five entries contain PYL (explained in Non-Standard Residues).
A complete list of all compounds in the PDB is available, including hydrogens, 3D structures, and bond orders, in the Chemical Components Dictionary of the Worldwide Protein Data Bank. This includes all Standard Residues as well as Non-Standard Residues, carbohydrate adducts, Ligands and Hetero Groups. It is updated weekly for newly released entries.
