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5u89
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 5u89 is ON HOLD Authors: Description: Category: Unreleased Structures) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of a cross-module fragment from the dimodular NRPS DhbF== | |
| + | <StructureSection load='5u89' size='340' side='right'caption='[[5u89]], [[Resolution|resolution]] 3.08Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[5u89]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Geos0 Geos0]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5U89 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5U89 FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MJ8:5-({[(2R)-3-AMINO-2-{[2-({N-[(2R)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY)BUTANOYL]-BETA-ALANYL}AMINO)ETHYL]SULFANYL}PROPYL]SULFONYL}AMINO)-5-DEOXYADENOSINE'>MJ8</scene></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GY4MC1_0171 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=581103 GEOS0]), GY4MC1_0172 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=581103 GEOS0])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5u89 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5u89 OCA], [http://pdbe.org/5u89 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5u89 RCSB], [http://www.ebi.ac.uk/pdbsum/5u89 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5u89 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Nonribosomal peptide synthetases (NRPS) are macromolecular machines that produce peptides with diverse activities. Structural information exists for domains, didomains, and even modules, but little is known about higher-order organization. We performed a multi-technique study on constructs from the dimodular NRPS DhbF. We determined a crystal structure of a cross-module construct including the adenylation (A) and peptidyl carrier protein (PCP) domains from module 1 and the condensation domain from module 2, complexed with an adenosine-vinylsulfonamide inhibitor and an MbtH-like protein (MLP). The action of the inhibitor and the role of the MLP were investigated using adenylation reactions and isothermal titration calorimetry. In the structure, the PCP and A domains adopt a novel conformation, and noncovalent, cross-module interactions are limited. We calculated envelopes of dimodular DhbF using negative-stain electron microscopy. The data show large conformational variability between modules. Together, our results suggest that NRPSs lack a uniform, rigid supermodular architecture. | ||
| - | + | X-Ray Crystallography and Electron Microscopy of Cross- and Multi-Module Nonribosomal Peptide Synthetase Proteins Reveal a Flexible Architecture.,Tarry MJ, Haque AS, Bui KH, Schmeing TM Structure. 2017 May 2;25(5):783-793.e4. doi: 10.1016/j.str.2017.03.014. Epub 2017, Apr 20. PMID:28434915<ref>PMID:28434915</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| + | <div class="pdbe-citations 5u89" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Geos0]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Schmeing, T M]] | ||
| + | [[Category: Tarry, M J]] | ||
| + | [[Category: Hydrolase-inhibitor complex]] | ||
| + | [[Category: Mbth-like protein]] | ||
| + | [[Category: Mechanism-based inhibitor]] | ||
| + | [[Category: Megaenzyme]] | ||
| + | [[Category: Nonribosomal peptide synthetase]] | ||
Current revision
Crystal structure of a cross-module fragment from the dimodular NRPS DhbF
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