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Single-stranded DNA-binding protein

(Difference between revisions)

Category: Topic Page
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See also [[Single stranded binding protein]].
See also [[Single stranded binding protein]].
 +
== 3D Structures of single-stranded DNA-binding protein ==
 +
[[Single-stranded DNA-binding protein 3D structures]]
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</StructureSection>
</StructureSection>
== 3D Structures of single-stranded DNA-binding protein ==
== 3D Structures of single-stranded DNA-binding protein ==
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*Single-stranded DNA-binding protein
*Single-stranded DNA-binding protein
 +
**[[3ull]], [[1s3o]], [[2dud]] – HsmtSSB residues 16-148 – human <br />
 +
**[[5d8e]], [[5d8f]] – hSSB residues 1-109 (mutant) <br />
 +
**[[6iwv]] – hSSB 2 residues 10-77 <br />
 +
**[[6s9r]] – SSB – ''Drosophila melanogaster'' <br />
 +
**[[6cqk]], [[6cqm]], [[6cqo]] – ySSB N terminal domain - yeast<br />
 +
**[[5m1x]] – ySSB N-OB domain (mutant)<br />
**[[1gpc]] – SSB gp32 – Enterobacteria phage T4 <br />
**[[1gpc]] – SSB gp32 – Enterobacteria phage T4 <br />
**[[2a1k]] – SSB gp32 – Enterobacteria phage RB69 <br />
**[[2a1k]] – SSB gp32 – Enterobacteria phage RB69 <br />
**[[1je5]] – SSB – Enterobacteria phage T7 <br />
**[[1je5]] – SSB – Enterobacteria phage T7 <br />
 +
**[[5odk]], [[5odj]] – Enc34SSB – Enterobacteria phage Enc34 <br />
**[[1vqe]], [[1yha]], [[1vqb]] – F1SSB – Enterobacteria phage F1<br />
**[[1vqe]], [[1yha]], [[1vqb]] – F1SSB – Enterobacteria phage F1<br />
**[[1vqa]], [[1vqc]], [[1vqd]], [[1vqe]], [[1vqf]], [[1vqg]], [[1vqh]], [[1vqi]], [[1vqj]], [[1ae2]], [[1ae3]], [[1gkh]] – F1SSB (mutant) <br />
**[[1vqa]], [[1vqc]], [[1vqd]], [[1vqe]], [[1vqf]], [[1vqg]], [[1vqh]], [[1vqi]], [[1vqj]], [[1ae2]], [[1ae3]], [[1gkh]] – F1SSB (mutant) <br />
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**[[1urj]] – SSB – human herpesvirus 1 <br />
**[[1urj]] – SSB – human herpesvirus 1 <br />
**[[1pfs]] – SSB (mutant) – Pseudomonas phage PF3 - NMR<br />
**[[1pfs]] – SSB (mutant) – Pseudomonas phage PF3 - NMR<br />
-
**[[3ull]], [[1s3o]], [[2dud]] – HsmtSSB residues 16-148 – human <br />
 
**[[1kaw]] – EcSSB chymotryptic domain – ''Escherichia coli'' <br />
**[[1kaw]] – EcSSB chymotryptic domain – ''Escherichia coli'' <br />
**[[1qvc]], [[1sru]] – EcSSB <br />
**[[1qvc]], [[1sru]] – EcSSB <br />
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**[[3dm3]] – SSB A domain – ''Methancaldococcus jannaschii''<br />
**[[3dm3]] – SSB A domain – ''Methancaldococcus jannaschii''<br />
**[[5xgt]], [[5yyu]] – SSB N-terminal – ''Staphylococcus aureus''<br />
**[[5xgt]], [[5yyu]] – SSB N-terminal – ''Staphylococcus aureus''<br />
-
**[[6cqk]], [[6cqm]], [[6cqo]] – ySSB N terminal domain - yeast<br />
+
**[[6bhw]] – BsSSB – ''Bacillus subtilis''<br />
-
**[[5m1x]] – ySSB N-OB domain (mutant)<br />
+
**[[5yuo]] – PaSSB – ''Pseudomonas aeruginosa''<br />
-
**[[5d8e]], [[5d8f]] – hSSB residues 1-109 (mutant) - human<br />
+
*Single-stranded DNA-binding protein complex with ssDNA
*Single-stranded DNA-binding protein complex with ssDNA
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**[[1eqq]] – EcSSB + ssDNA <br />
**[[1eqq]] – EcSSB + ssDNA <br />
**[[2vw9]] – HpSSB + ssDNA <br />
**[[2vw9]] – HpSSB + ssDNA <br />
-
**[[3vdy]] – SSB + ssDNA – ''Bacillus subtilis''<br />
+
**[[3vdy]], [[6bhx]] – BsSSB + ssDNA <br />
**[[3a5u]] – MsSSB chymotryptic domain + ssDNA <br />
**[[3a5u]] – MsSSB chymotryptic domain + ssDNA <br />
**[[3udg]] – DrSSB + ssDNA <br />
**[[3udg]] – DrSSB + ssDNA <br />
**[[2mna]] – SsSSB + ssDNA - NMR<br />
**[[2mna]] – SsSSB + ssDNA - NMR<br />
 +
**[[6jdg]], [[6irq]] – PaSSB + ssDNA <br />
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**[[5odn]] – SrSSB + ssDNA - ''Salinibacter ruber'' <br />
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**[[5odp]] – SrSSB (mutant) + ssDNA <br />
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**[[5odl]] – Enc34SSB + ssDNA <br />
*Other single-stranded DNA-binding protein complexes
*Other single-stranded DNA-binding protein complexes
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**[[6rup]] – hSSB residues 16-148 + peptide<br />
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**[[6tyd]] – hSSB 2 residues 1-94 + LDB1 <br />
**[[3ufm]], [[3uf7]] – DrSSB C terminal + uracil-DNA glycosylase <br />
**[[3ufm]], [[3uf7]] – DrSSB C terminal + uracil-DNA glycosylase <br />
 +
**[[5yun]] – PaSSB + myricetin <br />
*Replication protein A70
*Replication protein A70
 +
**[[1l1o]] – hRPA14 + hRPA32 central domain + hRPA70 C terminal <br />
**[[1ewi]], [[2b29]] - hRPA70 N terminal - NMR<br />
**[[1ewi]], [[2b29]] - hRPA70 N terminal - NMR<br />
**[[4ipc]], [[4ipd]], [[4ipg]] - hRPA70 N terminal (mutant) <br />
**[[4ipc]], [[4ipd]], [[4ipg]] - hRPA70 N terminal (mutant) <br />
**[[1fgu]] – hRPA70 central domain <br />
**[[1fgu]] – hRPA70 central domain <br />
-
**[[1ynx]] – yRPA69 DBD-A – NMR<br />
 
**[[1jmc]] – hRPA70 central domain + DNA <br />
**[[1jmc]] – hRPA70 central domain + DNA <br />
**[[2b3g]] - hRPA70 N terminal + p53 peptide<br />
**[[2b3g]] - hRPA70 N terminal + p53 peptide<br />
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**[[5n8a]] - hRPA70 N terminal (mutant) + PrimPol<br />
**[[5n8a]] - hRPA70 N terminal (mutant) + PrimPol<br />
**[[4ijh]], [[4ijl]], [[4iph]], [[4luo]], [[4luv]], [[4luz]], [[4lw1]], [[4lwc]], [[4o0a]], [[4r4c]], [[4r4i]], [[4r4o]], [[4r4q]], [[4r4t]], [[5e7n]] - hRPA70 N terminal (mutant) + inhibitor<br />
**[[4ijh]], [[4ijl]], [[4iph]], [[4luo]], [[4luv]], [[4luz]], [[4lw1]], [[4lwc]], [[4o0a]], [[4r4c]], [[4r4i]], [[4r4o]], [[4r4q]], [[4r4t]], [[5e7n]] - hRPA70 N terminal (mutant) + inhibitor<br />
 +
**[[1ynx]] – yRPA69 DBD-A – NMR<br />
 +
**[[6i52]] – yRPA1 + yRPA2 + yRPA3 + ssDNA – Cryo EM <br />
-
*Replication protein A70+A14+A32
 
- 
-
**[[1l1o]] – hRPA14 + hRPA32 central domain + hRPA70 C terminal <br />
 
}}
}}
== References ==
== References ==
<references/>
<references/>
[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 08:20, 9 February 2020


E. coli SSB complex with ssDNA (stick model) and UMP 1eqq

Drag the structure with the mouse to rotate

3D Structures of single-stranded DNA-binding protein

Updated on 09-February-2020

References

  1. ↑ Marceau AH. Functions of single-strand DNA-binding proteins in DNA replication, recombination, and repair. Methods Mol Biol. 2012;922:1-21. doi: 10.1007/978-1-62703-032-8_1. PMID:22976174 doi:http://dx.doi.org/10.1007/978-1-62703-032-8_1

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Michal Harel, Alexander Berchansky

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