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4v8m

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Revision as of 19:32, 10 April 2020

High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome

4v8m, resolution 5.57Å

Structural highlights

4v8m is a 86 chain structure with sequence from Trypanosoma brucei and Trypanosoma brucei brucei. This structure supersedes the now removed PDB entries 3zeq, 3zex, 3zey and 3zf7. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Experimental data:	Check to display Experimental Data
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[Q383I8_TRYB2] Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.[HAMAP-Rule:MF_03015] [RL40_TRYBB] Ubiquitin: exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity). 60S ribosomal protein L40: component of the 60S subunit of the ribosome. [Q386L1_TRYB2] Binds to the 23S rRNA.[RuleBase:RU000576]

Publication Abstract from PubMed

Ribosomes, the protein factories of living cells, translate genetic information carried by messenger RNAs into proteins, and are thus involved in virtually all aspects of cellular development and maintenance. The few available structures of the eukaryotic ribosome reveal that it is more complex than its prokaryotic counterpart, owing mainly to the presence of eukaryote-specific ribosomal proteins and additional ribosomal RNA insertions, called expansion segments. The structures also differ among species, partly in the size and arrangement of these expansion segments. Such differences are extreme in kinetoplastids, unicellular eukaryotic parasites often infectious to humans. Here we present a high-resolution cryo-electron microscopy structure of the ribosome of Trypanosoma brucei, the parasite that is transmitted by the tsetse fly and that causes African sleeping sickness. The atomic model reveals the unique features of this ribosome, characterized mainly by the presence of unusually large expansion segments and ribosomal-protein extensions leading to the formation of four additional inter-subunit bridges. We also find additional rRNA insertions, including one large rRNA domain that is not found in other eukaryotes. Furthermore, the structure reveals the five cleavage sites of the kinetoplastid large ribosomal subunit (LSU) rRNA chain, which is known to be cleaved uniquely into six pieces, and suggests that the cleavage is important for the maintenance of the T. brucei ribosome in the observed structure. We discuss several possible implications of the large rRNA expansion segments for the translation-regulation process. The structure could serve as a basis for future experiments aimed at understanding the functional importance of these kinetoplastid-specific ribosomal features in protein-translation regulation, an essential step towards finding effective and safe kinetoplastid-specific drugs.

High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome.,Hashem Y, des Georges A, Fu J, Buss SN, Jossinet F, Jobe A, Zhang Q, Liao HY, Grassucci RA, Bajaj C, Westhof E, Madison-Antenucci S, Frank J Nature. 2013 Feb 21;494(7437):385-9. doi: 10.1038/nature11872. Epub 2013 Feb 10. PMID:23395961^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Hashem Y, des Georges A, Fu J, Buss SN, Jossinet F, Jobe A, Zhang Q, Liao HY, Grassucci RA, Bajaj C, Westhof E, Madison-Antenucci S, Frank J. High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome. Nature. 2013 Feb 21;494(7437):385-9. doi: 10.1038/nature11872. Epub 2013 Feb 10. PMID:23395961 doi:http://dx.doi.org/10.1038/nature11872

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4v8m"

@@ Line 3: / Line 3: @@
 <SX load='4v8m' size='340' side='right' viewer='molstar' caption='[[4v8m]], [[Resolution|resolution]] 5.57&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4v8m]] is a 86 chain structure with sequence from [http://en.wikipedia.org/wiki/Trypanosoma_brucei Trypanosoma brucei] and [http://en.wikipedia.org/wiki/Trypanosoma_brucei_brucei Trypanosoma brucei brucei]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3zeq 3zeq], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3zex 3zex], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3zey 3zey] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3zf7 3zf7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V8M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4V8M FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4v8m]] is a 86 chain structure with sequence from [http://en.wikipedia.org/wiki/Trypanosoma_brucei Trypanosoma brucei] and [http://en.wikipedia.org/wiki/Trypanosoma_brucei_brucei Trypanosoma brucei brucei]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3zeq 3zeq], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3zex 3zex], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3zey 3zey] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3zf7 3zf7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V8M OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=4V8M FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4v8m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v8m OCA], [http://pdbe.org/4v8m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4v8m RCSB], [http://www.ebi.ac.uk/pdbsum/4v8m PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4v8m ProSAT]</span></td></tr>
+</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=4v8m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v8m OCA], [http://pdbe.org/4v8m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4v8m RCSB], [http://www.ebi.ac.uk/pdbsum/4v8m PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4v8m ProSAT]</span></td></tr>
 </table>
 == Function ==

4v8m

From Proteopedia

Revision as of 19:32, 10 April 2020

High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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