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6eib

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'''Unreleased structure'''
 
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The entry 6eib is ON HOLD
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==Structure of the active GGEEF domain of a diguanylate cyclase from Vibrio cholerae.==
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<StructureSection load='6eib' size='340' side='right'caption='[[6eib]], [[Resolution|resolution]] 1.94&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6eib]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibc3 Vibc3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6EIB OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6EIB FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VC0395_0300 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=345073 VIBC3])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6eib FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6eib OCA], [http://pdbe.org/6eib PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6eib RCSB], [http://www.ebi.ac.uk/pdbsum/6eib PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6eib ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Cyclic-di-GMP (c-di-GMP) synthesized by diguanylate cyclases has been an important and ubiquitous secondary messenger in almost all bacterial systems. In Vibrio cholerae, c-di-GMP plays an intricate role in the production of the exopolysaccharide matrix, and thereby, in biofilm formation. The formation of the surface biofilm enables the bacteria to survive in aquatic bodies, when not infecting a human host. Diguanylate cyclases are the class of enzymes which synthesize c-di-GMP from two molecules of GTP and are endowed with a GGDEF or, a GGEEF signature domain. The VC0395_0300 protein from V. cholerae, has been established as a diguanylate cyclase with a necessary role in biofilm formation. Here we present the structure of an N-terminally truncated form of VC0395_0300, which retains the active GGEEF domain for diguanylate cyclase activity but lacks 160 residues from the poorly organized N-terminal domain. X-ray diffraction data was collected from a crystal of VC0395_0300(161-321) to a resolution of 1.9 A. The structure displays remarkable topological similarity with diguanylate cyclases from other bacterial systems, but lacks the binding site for c-di-GMP present in its homologues. Finally, we demonstrate the ability of the truncated diguanylate cyclase VC0395_0300(161-321) to produce c-di-GMP, and its role in biofilm formation for the bacteria.
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Authors: Chouhan, O.P., Roske, Y.
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Structure of the active GGEEF domain of a diguanylate cyclase from Vibrio cholerae.,Chouhan OP, Roske Y, Heinemann U, Biswas S Biochem Biophys Res Commun. 2020 Mar 5;523(2):287-292. doi:, 10.1016/j.bbrc.2019.11.179. Epub 2019 Dec 18. PMID:31862141<ref>PMID:31862141</ref>
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Description: Structure of the active GGEEF domain of a diguanylate cyclase from Vibrio cholerae.
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Chouhan, O.P]]
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<div class="pdbe-citations 6eib" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Vibc3]]
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[[Category: Chouhan, O P]]
[[Category: Roske, Y]]
[[Category: Roske, Y]]
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[[Category: Diguanylate cyclase]]
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[[Category: Ggeef domain]]
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[[Category: Transferase]]

Current revision

Structure of the active GGEEF domain of a diguanylate cyclase from Vibrio cholerae.

PDB ID 6eib

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