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6ncf

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(New page: '''Unreleased structure''' The entry 6ncf is ON HOLD Authors: Newcomer, M.E., Gilbert, N.C., Neau, D.B. Description: The structure of Stable-5-Lipoxygenase bound to AKBA [[Category: Un...)
Current revision (07:18, 27 May 2020) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 6ncf is ON HOLD
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==The structure of Stable-5-Lipoxygenase bound to AKBA==
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<StructureSection load='6ncf' size='340' side='right'caption='[[6ncf]], [[Resolution|resolution]] 2.87&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6ncf]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NCF OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6NCF FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AF7:(3alpha,8alpha,17alpha,18alpha)-3-(acetyloxy)-11-oxours-12-en-23-oic+acid'>AF7</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ALOX5, LOG5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Arachidonate_5-lipoxygenase Arachidonate 5-lipoxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.34 1.13.11.34] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6ncf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ncf OCA], [http://pdbe.org/6ncf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ncf RCSB], [http://www.ebi.ac.uk/pdbsum/6ncf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ncf ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/LOX5_HUMAN LOX5_HUMAN]] Catalyzes the first step in leukotriene biosynthesis, and thereby plays a role in inflammatory processes.<ref>PMID:21233389</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Leukotrienes (LT) are lipid mediators of the inflammatory response that are linked to asthma and atherosclerosis. LT biosynthesis is initiated by 5-lipoxygenase (5-LOX) with the assistance of the substrate-binding 5-LOX-activating protein at the nuclear membrane. Here, we contrast the structural and functional consequences of the binding of two natural product inhibitors of 5-LOX. The redox-type inhibitor nordihydroguaiaretic acid (NDGA) is lodged in the 5-LOX active site, now fully exposed by disordering of the helix that caps it in the apo-enzyme. In contrast, the allosteric inhibitor 3-acetyl-11-keto-beta-boswellic acid (AKBA) from frankincense wedges between the membrane-binding and catalytic domains of 5-LOX, some 30 A from the catalytic iron. While enzyme inhibition by NDGA is robust, AKBA promotes a shift in the regiospecificity, evident in human embryonic kidney 293 cells and in primary immune cells expressing 5-LOX. Our results suggest a new approach to isoform-specific 5-LOX inhibitor development through exploitation of an allosteric site in 5-LOX.
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Authors: Newcomer, M.E., Gilbert, N.C., Neau, D.B.
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Structural and mechanistic insights into 5-lipoxygenase inhibition by natural products.,Gilbert NC, Gerstmeier J, Schexnaydre EE, Borner F, Garscha U, Neau DB, Werz O, Newcomer ME Nat Chem Biol. 2020 May 11. pii: 10.1038/s41589-020-0544-7. doi:, 10.1038/s41589-020-0544-7. PMID:32393899<ref>PMID:32393899</ref>
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Description: The structure of Stable-5-Lipoxygenase bound to AKBA
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Neau, D.B]]
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<div class="pdbe-citations 6ncf" style="background-color:#fffaf0;"></div>
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[[Category: Gilbert, N.C]]
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== References ==
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[[Category: Newcomer, M.E]]
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Arachidonate 5-lipoxygenase]]
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[[Category: Human]]
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[[Category: Large Structures]]
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[[Category: Gilbert, N C]]
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[[Category: Neau, D B]]
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[[Category: Newcomer, M E]]
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[[Category: Allostery]]
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[[Category: Complex]]
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[[Category: Inhibitor]]
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[[Category: Lipoxygenase]]
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[[Category: Oxidoreductase]]
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[[Category: Oxidoreductase-oxidoreductase inhibitor complex]]

Current revision

The structure of Stable-5-Lipoxygenase bound to AKBA

PDB ID 6ncf

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