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User:Karsten Theis/Sandbox 1

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< User:Karsten Theis(Difference between revisions)
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yo
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<applet size='[450,338]' frame='true' align='right'
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scene='User:Karsten_Theis/Sandbox_1/Globe3/2'
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caption='UvrB' />
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Here is the <scene name='49/491982/Pentane/1'>pentane</scene> molecule. Here is how it can rotate around its single bonds to get a different conformation:
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<jmol>
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<jmolLink>
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<script> var a = [1,2,3,4,5,6,7,8,9,10]; var b = [1,2,3,4,5,6,7,8,9,10]; for(var i IN a) {for(var i IN b){set refreshing false; rotate branch {C3}{C4} 5; rotate branch {C3}{C2} 2; set refreshing true; delay 0.05}}
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</script>
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<text>rotate</text>
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</jmolLink>
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</jmol>
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<jmol>
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<jmolLink>
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<script> load $pentane; rotate BRANCH [1 2 3 4 0 900 3 2 1 0 1800 0] 10
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</script>
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<text>Simpler, single command script</text>
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</jmolLink>
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</jmol>
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load $pentane; rotate BRANCH [1 2 3 4 0 900 3 2 1 0 1800 0] 10
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For large structures, use label "%D" to find numbers of selected atoms.
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<scene name='User:Karsten_Theis/Sandbox_1/Globe2/1'>Proteopedia</scene>
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<scene name='User:Karsten_Theis/Sandbox_1/Fig1/1'>UvrB</scene>
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<scene name='User:Karsten_Theis/Sandbox_1/Globe3/1'>Fancy</scene>
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<scene name='49/491982/Proinsulin/1'>insulin</scene>
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<scene name='49/491982/Proinsulin/6'>insulin surface</scene>
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<scene name='49/491982/Amyloid_stack_2m5n/2'>amyloid aggregate</scene>
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<scene name='49/491982/1bna/1'>DNA</scene>
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<scene name='49/491982/1bna/3'>DNA different orientation</scene>
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<jmol>
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<jmolLink>
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<script> slab on; var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}
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</script>
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<text>Fade surface to invisible</text>
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</jmolLink>
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</jmol> (basic)
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== Table ==
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<table>
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<tr>
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<td>[http://www.google.com W2]<br> [[Image:Insulin.gif|link=Insulin]]</td>
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<td>[[Image:Insulin.gif]]</td>
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<td>[[Image:Insulin.gif]]</td>
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</tr>
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<tr>
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<td>[[Image:Insulin.gif]]</td>
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<td>[[Image:Insulin.gif]]</td>
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<td>[[Image:Insulin.gif]]</td>
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</tr>
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<tr>
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<td>[[Image:Insulin.gif]]</td>
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<td>[[Image:Insulin.gif]]</td>
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<td>[[Image:Insulin.gif]]</td>
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</tr>
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</table>

Current revision

UvrB

Drag the structure with the mouse to rotate


Here is the molecule. Here is how it can rotate around its single bonds to get a different conformation:



load $pentane; rotate BRANCH [1 2 3 4 0 900 3 2 1 0 1800 0] 10

For large structures, use label "%D" to find numbers of selected atoms.




(basic)



Table

W2
link=Insulin		 Image:Insulin.gif Image:Insulin.gif
Image:Insulin.gif Image:Insulin.gif Image:Insulin.gif
Image:Insulin.gif Image:Insulin.gif Image:Insulin.gif

Proteopedia Page Contributors and Editors (what is this?)

Karsten Theis

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