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5jty

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Revision as of 11:39, 17 June 2020

Glutamate- and DCKA-bound GluN1/GluN2A agonist binding domains with MPX-007

Structural highlights

5jty is a 2 chain structure with sequence from Buffalo rat. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:	, ,
Related:	5i57, 5i58, 5i59
Gene:	Grin1, Nmdar1 (Buffalo rat), Grin2a (Buffalo rat)
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[NMDZ1_RAT] NMDA receptor subtype of glutamate-gated ion channels possesses high calcium permeability and voltage-dependent sensitivity to magnesium. Mediated by glycine. Plays a key role in synaptic plasticity, synaptogenesis, excitotoxicity, memory acquisition and learning. It mediates neuronal functions in glutamate neurotransmission. Is involved in the cell surface targeting of NMDA receptors.^[1] [NMDE1_RAT] NMDA receptor subtype of glutamate-gated ion channels possesses high calcium permeability and voltage-dependent sensitivity to magnesium. Activation requires binding of agonist to both types of subunits.

Publication Abstract from PubMed

NMDA receptors mediate excitatory synaptic transmission and regulate synaptic plasticity in the central nervous system, but their dysregulation is also implicated in numerous brain disorders. Here, we describe GluN2A-selective negative allosteric modulators (NAMs) that inhibit NMDA receptors by stabilizing the apo state of the GluN1 ligand-binding domain (LBD), which is incapable of triggering channel gating. We describe structural determinants of NAM binding in crystal structures of the GluN1/2A LBD heterodimer, and analyses of NAM-bound LBD structures corresponding to active and inhibited receptor states reveal a molecular switch in the modulatory binding site that mediate the allosteric inhibition. NAM binding causes displacement of a valine in GluN2A and the resulting steric effects can be mitigated by the transition from glycine bound to apo state of the GluN1 LBD. This work provides mechanistic insight to allosteric NMDA receptor inhibition, thereby facilitating the development of novel classes NMDA receptor modulators as therapeutic agents.

Structural Basis for Negative Allosteric Modulation of GluN2A-Containing NMDA Receptors.,Yi F, Mou TC, Dorsett KN, Volkmann RA, Menniti FS, Sprang SR, Hansen KB Neuron. 2016 Sep 3. pii: S0896-6273(16)30506-2. doi:, 10.1016/j.neuron.2016.08.014. PMID:27618671^[2]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Inanobe A, Furukawa H, Gouaux E. Mechanism of partial agonist action at the NR1 subunit of NMDA receptors. Neuron. 2005 Jul 7;47(1):71-84. PMID:15996549 doi:10.1016/j.neuron.2005.05.022
↑ Yi F, Mou TC, Dorsett KN, Volkmann RA, Menniti FS, Sprang SR, Hansen KB. Structural Basis for Negative Allosteric Modulation of GluN2A-Containing NMDA Receptors. Neuron. 2016 Sep 3. pii: S0896-6273(16)30506-2. doi:, 10.1016/j.neuron.2016.08.014. PMID:27618671 doi:http://dx.doi.org/10.1016/j.neuron.2016.08.014

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5jty"

@@ Line 1: / Line 1: @@
 ==Glutamate- and DCKA-bound GluN1/GluN2A agonist binding domains with MPX-007==
-<StructureSection load='5jty' size='340' side='right' caption='[[5jty]], [[Resolution|resolution]] 2.72&Aring;' scene=''>
+<StructureSection load='5jty' size='340' side='right'caption='[[5jty]], [[Resolution|resolution]] 2.72&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5jty]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JTY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JTY FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5jty]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Buffalo_rat Buffalo rat]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JTY OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5JTY FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=2JK:4-HYDROXY-5,7-DIMETHYLQUINOLINE-2-CARBOXYLIC+ACID'>2JK</scene>, <scene name='pdbligand=6ND:5-({[(3,4-DIFLUOROPHENYL)SULFONYL]AMINO}METHYL)-6-METHYL-N-[(2-METHYL-1,3-THIAZOL-5-YL)METHYL]PYRAZINE-2-CARBOXAMIDE'>6ND</scene>, <scene name='pdbligand=GLU:GLUTAMIC+ACID'>GLU</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2JK:4-HYDROXY-5,7-DIMETHYLQUINOLINE-2-CARBOXYLIC+ACID'>2JK</scene>, <scene name='pdbligand=6ND:5-({[(3,4-DIFLUOROPHENYL)SULFONYL]AMINO}METHYL)-6-METHYL-N-[(2-METHYL-1,3-THIAZOL-5-YL)METHYL]PYRAZINE-2-CARBOXAMIDE'>6ND</scene>, <scene name='pdbligand=GLU:GLUTAMIC+ACID'>GLU</scene></td></tr>
 <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5i57|5i57]], [[5i58|5i58]], [[5i59|5i59]]</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jty FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jty OCA], [http://pdbe.org/5jty PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jty RCSB], [http://www.ebi.ac.uk/pdbsum/5jty PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jty ProSAT]</span></td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Grin1, Nmdar1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Buffalo rat]), Grin2a ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Buffalo rat])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5jty FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jty OCA], [http://pdbe.org/5jty PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jty RCSB], [http://www.ebi.ac.uk/pdbsum/5jty PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jty ProSAT]</span></td></tr>
 </table>
 == Function ==
@@ Line 19: / Line 20: @@
 </div>
 <div class="pdbe-citations 5jty" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Glutamate receptor 3D structures|Glutamate receptor 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
+[[Category: Buffalo rat]]
+[[Category: Large Structures]]
 [[Category: Hansen, K B]]
 [[Category: Mou, T C]]

5jty

From Proteopedia

Revision as of 11:39, 17 June 2020

Glutamate- and DCKA-bound GluN1/GluN2A agonist binding domains with MPX-007

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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