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Beta-glucosidase 3D structures

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{{#tree:id=OrganizedByTopic|openlevels=0|
{{#tree:id=OrganizedByTopic|openlevels=0|
-
*Beta-glucosidase
+
*Beta glucosidase
**[[2jfe]], [[3gxd]], [[3gxi]], [[3gxm]] - hGB cystolic – human<br />
**[[2jfe]], [[3gxd]], [[3gxi]], [[3gxm]] - hGB cystolic – human<br />
-
**[[3ke0]], [[3keh]] - hGB (mutant)<br />
+
**[[3ke0]], [[3keh]] - hGB (mutant) <br />
**[[3ahz]] – tGB – termite<br />
**[[3ahz]] – tGB – termite<br />
**[[5cg0]] – GB – fall armyworm<br />
**[[5cg0]] – GB – fall armyworm<br />
 +
**[[5nbs]] – GB – ''Neurospora crassa''<br />
 +
**[[3gno]] - JrGB residues 38-521 – Japanese rice<br />
 +
**[[2rgl]], [[2rgm ]]- JrGB residues 29-504<br />
 +
**[[3f4v]], [[3f5j]], [[3f5k]], [[3f5l]], [[3scn]], [[3sco]], [[3sct]], [[3scu]], [[3scv]], [[3scw]], [[3scp]], [[3scr]], [[4qll]] - JrGB7 (mutant) <br />
**[[2dga]] - wGB residues 1-520 – wheat<br />
**[[2dga]] - wGB residues 1-520 – wheat<br />
-
**[[1hxj]], [[1e1e]] – ZmGB – ''Zea mays''<br />
+
**[[1hxj]], [[1e1e]]– ZmGB – Zea mays<br />
**[[1e4l]] - ZmGB (mutant) <br />
**[[1e4l]] - ZmGB (mutant) <br />
**[[1cbg]] – GB cyanogenic – White clover<br />
**[[1cbg]] – GB cyanogenic – White clover<br />
-
**[[3aiu]] - ryGB residues 50-568 – rye<br />
+
**[[3aiu]] - rGB residues 50-568 – rye<br />
-
**[[3ptk]], [[3gno]], [[2rgl]], [[2rgm]] – rGB - rice<br />
+
**[[3ptk]] – rGB – rice<br />
-
**[[3f4v]], [[3f5j]], [[3f5k]], [[3f5l]],[[3scn]], [[3sco]], [[3sct]], [[3scu]], [[3scv]], [[3scw]], [[3scp]], [[3scr]], [[4qll]] - rGB (mutant) <br />
+
**[[5bwf]] – ThGB – ''Trichoderma harzianum''<br />
-
**[[3ahx]] – GBA – ''Clostridium cellulovorans''<br />
+
**[[6efu]] – ThGB (mutant)<br />
 +
**[[5bvu]] – TxGB – ''Thermoanaerobacterium xylanolyticum<''br />
 +
**[[4mdo]] – HgGB – ''Humicola grisea''<br />
 +
**[[3wh5]], [[3u48]], [[3u4a]], [[5ns6]], [[5wka]] – MeGB – Metagenome<br />
 +
**[[5ayi]], [[5ayb]], [[5ns7]] – MeGB (mutant)<br />
 +
**[[5ju6]] – GB – ''Talaromyces emersonii''<br />
 +
**[[3ahx]] – GB – ''Clostridium cellulovorans''<br />
**[[3ahy]] – TrGB – ''Trichoderma reesei''<br />
**[[3ahy]] – TrGB – ''Trichoderma reesei''<br />
**[[3abz]] – KmGB – ''Kluyveromyces marxianus''<br />
**[[3abz]] – KmGB – ''Kluyveromyces marxianus''<br />
**[[2x40]] – TnGB3B – ''Thermotoga neapolitana''<br />
**[[2x40]] – TnGB3B – ''Thermotoga neapolitana''<br />
-
**[[4hz6]], [[3cmj]] - ubGB catalytic domain (mutant) – Uncultured bacteria<br />
+
**[[4hz6]], [[6ier]], [[6jfp]] – ubGB – uncultured bacterium
-
**[[2o9p]], [[1bga]] – PpGBB – ''Paenibacillus polymyxa''<br />
+
**[[3cmj]] - ubGB catalytic domain (mutant)
-
**[[2e3z]] – PcGB – ''Phanerochaete crysosporium''<br />
+
**[[2o9p]], [[1bga]] – PpGB – ''Paenibacillus polymyxa''<br />
 +
**[[2e3z]] – PcGB – ''Phanerochaete crysosporium<''br />
**[[2vff]], [[1vff]] – GB – ''Pyrococcus horikoshii''<br />
**[[2vff]], [[1vff]] – GB – ''Pyrococcus horikoshii''<br />
**[[1oif]], [[1od0]] – TmGB catalytic domain - ''Thermotoga maritima''<br />
**[[1oif]], [[1od0]] – TmGB catalytic domain - ''Thermotoga maritima''<br />
Line 29: Line 40:
**[[1ug6]] – TtGB - ''Thermus thermophilus''<br />
**[[1ug6]] – TtGB - ''Thermus thermophilus''<br />
**[[4bce]] – TtGB (mutant) <br />
**[[4bce]] – TtGB (mutant) <br />
-
**[[1gon]] – SsGB – ''Streptomyces sp.'' <br />
+
**[[1gon]] – SsGB – ''Streptomyces'' sp. <br />
**[[1qox]] – GB - ''Bacillus circulans''<br />
**[[1qox]] – GB - ''Bacillus circulans''<br />
-
**[[1tr1]] - BpGBB (mutant) - ''Bacillus polymyxa''<br />
+
**[[1tr1]] - BpGB (mutant) - ''Bacillus polymyxa''<br />
**[[3ut0]], [[3usz]] – PsGB residues 28-840 – ''Pseudoalteromonas''<br />
**[[3ut0]], [[3usz]] – PsGB residues 28-840 – ''Pseudoalteromonas''<br />
**[[3f95]] – PsGB residues 657-840<br />
**[[3f95]] – PsGB residues 657-840<br />
Line 38: Line 49:
**[[3ta9]] – GB – ''Halothermothrix orenii''<br />
**[[3ta9]] – GB – ''Halothermothrix orenii''<br />
**[[3zyz]], [[3zz1]] – GB – ''Hypocrea jecorina''<br />
**[[3zyz]], [[3zz1]] – GB – ''Hypocrea jecorina''<br />
-
**[[4hz6]] – ubGB – uncultured bacterium<br />
 
**[[4iib]] – AaGB – ''Aspergillus aculeatus''<br />
**[[4iib]] – AaGB – ''Aspergillus aculeatus''<br />
-
**[[5fjj]] – GB – ''Aspergillus oryzae''<br />
 
**[[5fji]] – GB – ''Aspergillus fumigatus''<br />
**[[5fji]] – GB – ''Aspergillus fumigatus''<br />
**[[5fjj]] – GB – ''Aspergillus oryzae''<br />
**[[5fjj]] – GB – ''Aspergillus oryzae''<br />
**[[5dt7]], [[5dt5]] – GB – ''Exiguobacterium antarcticum''<br />
**[[5dt7]], [[5dt5]] – GB – ''Exiguobacterium antarcticum''<br />
-
**[[5bwf]], [[5jbk]], [[5jbo]] – GB – ''Trichoderma harzianum''<br />
+
**[[5ogz]] - GB – ''Ruminilostridium thermocellum''<br />
-
**[[5bvu]] – TxGB – ''Thermoanaerobacterium xylanolyticum''<br />
+
**[[5wvp]], [[5wug]] - GB – ''Paenibacillus barengoltzii''<br />
-
**[[3w53]] – GB – ''Micrococcus antarcticus''<br />
+
**[[5xxl]] - BtGB – ''Bacteroides thetaiotamicron''<br />
-
**[[4mdo]] – HgGB – ''Humicola grisea''<br />
+
**[[6jxg]] - GB – ''Chaetomella raphigera''<br />
-
**[[3wh5]], [[3u48]], [[3u4a]], [[5gnx]], [[5gny]], [[5gnz]], [[5wka]], [[5ns6]] – MeGB – ''Metagenome''<br />
+
**[[6r5i]] - PaGB – ''Pseudomonas aeruginosa''<br />
-
**[[5ayi]], [[5ayb]] – MeGB (mutant)<br />
+
**[[6rjk]] - AtGB – ''Agrobacterium tumefaciens''<br />
-
**[[5ju6]] – GB – ''Talaromyces emersonii''<br />
+
-
**[[5wug]], [[5wvp]] – GB – ''Paenibacillus barengoltzii''<br />
+
-
**[[5xxl]] – BtGB – ''Bacterioides thetaiotaomicron''<br />
+
-
**[[5ogz]] – GB – ''Ruminiclostridium thermocellum''<br />
+
-
*Beta-glucosidase complex with sugar
+
*Beta-glucosidase complex with glucose
-
**[[2zox]], [[2e9l]], [[2e9m]] - hGB cystolic + glucoside<br />
+
**[[3wba]], [[3wbe]] – rGB (mutant) + glucose<br />
 +
**[[4hz8]] - ubGB (mutant) + glucose<br />
 +
**[[3vij]] – NkGB (mutant) + glucose<br />
 +
**[[4i3g]] – GB + glucose – ''Streptomyces venezuelae''<br />
 +
**[[5jp0]] – GB + glucose – ''Bacterioides ovatus''<br />
 +
**[[5bx5]] – TxGB + glucose <br />
 +
**[[4mdp]] – HgGB + glucose<br />
 +
**[[3wh6]] – MeGB + glucose<br />
 +
**[[6r5o]] – PaGB + glucose<br />
 +
**[[6r5p]] – PaGB (mutant) + glucose<br />
 +
**[[6rjm]] – AtGB + glucose<br />
 +
**[[6sz6]] – GB + glucose – ''Chaetonium thermophilum''<br />
 +
 
 +
*Beta-glucosidase complex with other sugars
 +
 
 +
**[[3gfx]] – hGB + drug<br />
**[[3vkk]] – hGB + mannose<br />
**[[3vkk]] – hGB + mannose<br />
 +
**[[2zox]], [[2e9l]], [[2e9m]] - hGB cystolic + glucoside<br />
**[[3ai0]] – tGB + glucoside<br />
**[[3ai0]] – tGB + glucoside<br />
-
**[[3air]] – wGB residues 50-569 + glucoside + dinitrophenol<br />
+
**[[3ptm]], [[3ptq]] – rGB + glucoside<br />
 +
**[[3aiv]] - rGB residues 50-568 + aglycone<br />
 +
**[[3aiw]] - rGB residues 50-568 + glucoside + dinitrophenol<br />
 +
**[[3gnp]], [[3gnr]] - JrGB residues 38-521 + glucoside<br />
 +
**[[3aht]], [[3ahv]], [[3scq]], [[3scs]], [[4qlk]], [[4qlj]] – JrGB7 (mutant) + saccharide<br />
 +
**[[3air]] – wGB residues 50-569 + glucoside + dinitrophenol <br />
**[[3ais]] - wGB residues 50-569 (mutant) + glucoside + aglycone<br />
**[[3ais]] - wGB residues 50-569 (mutant) + glucoside + aglycone<br />
**[[3aiq]] - wGB residues 50-569 + aglycone<br />
**[[3aiq]] - wGB residues 50-569 + aglycone<br />
Line 66: Line 92:
**[[1e1f]] - ZmGB + glucoside<br />
**[[1e1f]] - ZmGB + glucoside<br />
**[[1h49]], [[1e4n]], [[1e56]] - ZmGB (mutant) + aglycone<br />
**[[1h49]], [[1e4n]], [[1e56]] - ZmGB (mutant) + aglycone<br />
-
**[[3aiv]] - rGB residues 50-568 + aglycone<br />
 
-
**[[3aiw]] - rGB residues 50-568 + glucoside + dinitrophenol<br />
 
-
**[[3gnp]], [[3gnr]] - rGB residues 38-521 + glucoside<br />
 
-
**[[3aht]], [[3ahv]], [[3scq]], [[3scs]], [[4qlk]], [[4qlj]] – rGB7 (mutant) + saccharide<br />
 
-
**[[3ptm]], [[3ptq]] – rGB + glucoside<br />
 
-
**[[3wba]], [[3wbe]] – rGB (mutant) + glucose<br />
 
-
**[[3ac0]] - KmGB + glucoside<br />
 
-
**[[2x41]], [[2x42]] - TnGB + glucoside<br />
 
**[[1oin]] - TmGBA + glucoside<br />
**[[1oin]] - TmGBA + glucoside<br />
-
**[[5oss]] – TmGB + glucoimidazole<br />
+
**[[5oss]] – TmGBA + gluco-imidazole<br />
**[[4hz7]], [[4hz8]] - ubGB residues 18-482 (mutant) + glucoside<br />
**[[4hz7]], [[4hz8]] - ubGB residues 18-482 (mutant) + glucoside<br />
**[[2o9s]], [[2o9r]], [[2z1s]] – PpGB + saccharide<br />
**[[2o9s]], [[2o9r]], [[2z1s]] – PpGB + saccharide<br />
Line 81: Line 99:
**[[1uyq]] - PpGB (mutant) + glucoside<br />
**[[1uyq]] - PpGB (mutant) + glucoside<br />
**[[1bgg]] - PpGB + gluconate<br />
**[[1bgg]] - PpGB + gluconate<br />
-
**[[2jie]] - BpGB + glucoside<br />
+
**[[2jie]] - BpGB + glucoside <br />
**[[1e4i]] - BpGB (mutant) + glucoside<br />
**[[1e4i]] - BpGB (mutant) + glucoside<br />
-
**[[2e40]] – PcGB + gluconolactone<br />
+
**[[2e40]] – PcGB + gluconolactone <br />
**[[5xxm]] - BtGB + gluconolactone<br />
**[[5xxm]] - BtGB + gluconolactone<br />
 +
**[[5xxo]] - BtGB + sophorotrise<br />
 +
**[[5xxn]] - BtGB (mutant) + sophorose<br />
**[[3vif]] - NkGB + gluconolactone – ''Neotermes koshunensis''<br />
**[[3vif]] - NkGB + gluconolactone – ''Neotermes koshunensis''<br />
-
**[[5xxn]], [[5xxo]] - BtGB + sophorose derivative<br />
 
**[[3vig]], [[3vii]] - NkGB + saccharide<br />
**[[3vig]], [[3vii]] - NkGB + saccharide<br />
**[[3vih]] – NkGB + glycerol<br />
**[[3vih]] – NkGB + glycerol<br />
-
**[[3vij]] – NkGB (mutant) + glucose<br />
 
**[[3vik]], [[3vil]], [[3vim]], [[3vin]], [[3vio]], [[3vip]] – NkGB (mutant) + saccharide<br />
**[[3vik]], [[3vil]], [[3vim]], [[3vin]], [[3vio]], [[3vip]] – NkGB (mutant) + saccharide<br />
-
**[[4hz7]], [[4hz8]] - ubGB (mutant) + glucose<br />
 
**[[1gnx]] - SsGB + saccharide - ''Sulfolobus solfataricus''<br />
**[[1gnx]] - SsGB + saccharide - ''Sulfolobus solfataricus''<br />
 +
**[[4iic]], [[4iid]], [[4iie]], [[4iif]] – AaGB + drug<br />
**[[4iig]], [[4iih]] – AaGB + saccharide<br />
**[[4iig]], [[4iih]] – AaGB + saccharide<br />
-
**[[4i3g]] – GB + glucose – ''Streptomyces venezuelae''<br />
 
-
**[[5jp0]] – GB + glucose – ''Bacterioides ovatus''<br />
 
-
**[[5bx5]] – TxGB + glucose <br />
 
**[[5bx4]] – TxGB + glucoimidazole<br />
**[[5bx4]] – TxGB + glucoimidazole<br />
**[[5bx2]] – TxGB + fluoroglucoside<br />
**[[5bx2]] – TxGB + fluoroglucoside<br />
-
**[[4mdp]] – HgGB + glucose<br />
 
-
**[[3wh6]] – MeGB + glucose<br />
 
-
**[[5z9s]] – EcGB + glucose – ''Escherichia coli''<br />
 
**[[3wh7]] – MeGB + fucose<br />
**[[3wh7]] – MeGB + fucose<br />
**[[3wh8]] – MeGB + isofagomine<br />
**[[3wh8]] – MeGB + isofagomine<br />
-
**[[5nbs]] – GB + mannose – ''Neurospora crassa''<br />
+
**[[3ac0]] - KmGB + glucoside<br />
 +
**[[2x41]], [[2x42]] - TnGB + glucoside<br />
 +
**[[6r5r]], [[6r5u]], [[6r5v]] – PaGB (mutant) + glucoside<br />
 +
**[[6r5t]] – PaGB (mutant) + lactose<br />
 +
**[[6rjo]] – AtGB (mutant) + salicin<br />
 +
**[[6rk2]] – AtGB (mutant) + pyrnose derivative<br />
*Beta-glucosidase complex with inhibitor
*Beta-glucosidase complex with inhibitor
-
**[[3gfx]] – hGB + drug<br />
+
**[[3rik]], [[3ril]] - hGB + inhibitor<br />
-
**[[3rik]], [[3ril]], [[2v3d]] - hGB + inhibitor<br />
+
**[[1y7v]] - hGB (mutant) + inhibitor<br />
**[[1y7v]] - hGB (mutant) + inhibitor<br />
**[[1e55]] - ZmGB (mutant) + inhibitor<br />
**[[1e55]] - ZmGB (mutant) + inhibitor<br />
-
**[[2wbg]], [[2wc3]], [[2wc4]], [[2vrj]], [[2jal]], [[2j75]], [[2j77]], [[2j78]], [[2j79]], [[2j7b]], [[2j7d]], [[2j7e]], [[2j7f]], [[2j7g]], [[2j7h]], [[2j7c]], [[2ces]], [[2cet]], [[2cbu]], [[2cbv]], [[1uz1]], [[1w3j]], [[1oim]], [[5n6t]], [[5n6s]] – TmGBA + inhibitor<br />
+
**[[2wbg]], [[2wc3]], [[2wc4]], [[2vrj]], [[2jal]], [[2j75]], [[2j77]], [[2j78]], [[2j79]], [[2j7b]], [[2j7d]], [[2j7e]], [[2j7f]], [[2j7g]], [[2j7h]], [[2j7c]], [[2ces]], [[2cet]], [[2cbu]], [[2cbv]], [[1uz1]], [[1w3j]], [[1oim]], [[5n6t]], [[5n6s]] – TmGBA + inhibitor <br />
-
**[[4iic]], [[4iid]], [[4iie]], [[4iif]] – AaGB + drug<br />
+
**[[2cer]] – SsGB + inhibitor <br />
**[[2cer]] – SsGB + inhibitor <br />
**[[5bx3]] - TxGB + inhibitor<br />
**[[5bx3]] - TxGB + inhibitor<br />
-
**[[5ns8]] – MeGB (mutant) + deoxynojirimycin<br />
+
**[[5ns8]] - MeGB (mutant) + inhibitor<br />
 +
**[[6qwi]], [[6r4k]] - PpGB + inhibitor<br />
 +
**[[6r5n]] - PaGB + inhibitor<br />
-
*6-phospho-β-glucosidase
+
*6-phospho--glucosidase
 +
**[[3eqn]] – WfPGB – White-rot fungus<br />
 +
**[[3eqo]] – WfPGB + glucolactone<br />
**[[1h4p]] – PGB I/II – yeast<br />
**[[1h4p]] – PGB I/II – yeast<br />
-
**[[3eqn]] – wfPGB – White-rot fungus<br />
 
-
**[[3eqo]] – wfPGB + glucolactone<br />
 
**[[1s6y]] – PGB – ''Geobacillus stearothermophilus''<br />
**[[1s6y]] – PGB – ''Geobacillus stearothermophilus''<br />
**[[1up4]] – TmPGB <br />
**[[1up4]] – TmPGB <br />
**[[1up6]], [[1up7]] – TmPGB + NAD + G6P<br />
**[[1up6]], [[1up7]] – TmPGB + NAD + G6P<br />
-
**[[3qom]], [[4gze]], [[5nav]] – PGB – ''Lactobacillus plantarum''<br />
+
**[[3qom]], [[4gze]] – PGB – ''Lactobacillus plantarum''<br />
-
**[[2xhy]] – EcPGB <br />
+
**[[2xhy]] – PGB – ''Escherichia coli''<br />
**[[4b3k]], [[4b3l]] – SpyGB – ''Streptococcus pyogenes''<br />
**[[4b3k]], [[4b3l]] – SpyGB – ''Streptococcus pyogenes''<br />
**[[5foo]] – SpyGB + inhibitor<br />
**[[5foo]] – SpyGB + inhibitor<br />
Line 134: Line 151:
**[[4ipn]] – SpGB + thiocellobiose<br />
**[[4ipn]] – SpGB + thiocellobiose<br />
-
*Glucan 1,3-β-glucosidase
+
*Glucan 1,3--glucosidase
-
**[[3ur7]], [[3ur8]] – poGGB - potato<br />
+
**[[3ur7]], [[3ur8]] – poGGB – potato<br />
-
**[[4gzi]] – poGGB (mutant)<br />
+
**[[4gzi]] – poGGB (mutant) <br />
**[[4gzj]] - poGGB (mutant) + saccharide<br />
**[[4gzj]] - poGGB (mutant) + saccharide<br />
**[[3n9k]] – CaGGB + glucoside – ''Candida albicans''<br />
**[[3n9k]] – CaGGB + glucoside – ''Candida albicans''<br />
-
**[[3o6a]] – CaGGB (mutant)<br />
+
**[[3o6a]] – CaGGB (mutant) <br />
-
 
+
-
*Glucan 1,4-β-glucosidase
+
-
 
+
-
**[[5m6g]] – CaGGB + sorbitol – ''Saccharopolyspora erythraea''<br />
+
*Raucaffricine-β-glucosidase
*Raucaffricine-β-glucosidase
**[[3u57]], [[3u5u]] – dpRGB (mutant) – devilpepper<br />
**[[3u57]], [[3u5u]] – dpRGB (mutant) – devilpepper<br />
-
**[[3u5y]] – dpRGB (mutant)m + secologanin<br />
+
**[[3u5y]] – dpRGB (mutant) + secologanin<br />
-
**[[4a3y]], [[4atd]] – seRGB - serpentwood<br />
+
**[[4a3y]], [[4atd]] – seRGB – serpentwood<br />
**[[4atl]] – seRGB + glucose<br />
**[[4atl]] – seRGB + glucose<br />
**[[4ek7]] – seRGB (mutant)<br />
**[[4ek7]] – seRGB (mutant)<br />
- 
**[[3zj6]] – seRGB + inhibitor<br />
**[[3zj6]] – seRGB + inhibitor<br />
Line 162: Line 174:
**[[2jf6]] – seSGB + strictosidine<br />
**[[2jf6]] – seSGB + strictosidine<br />
}}
}}
 +
[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 09:00, 22 June 2020

3D structures of Beta-glucosidase

Updated on 22-June-2020

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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