This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2vo5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Structural and biochemical evidence for a boat-like transition state in beta-mannosidases==
==Structural and biochemical evidence for a boat-like transition state in beta-mannosidases==
-
<StructureSection load='2vo5' size='340' side='right' caption='[[2vo5]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
+
<StructureSection load='2vo5' size='340' side='right'caption='[[2vo5]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2vo5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bactn Bactn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VO5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VO5 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2vo5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bactn Bactn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VO5 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2VO5 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=VBZ:(1R,4R,5R,7R,8R)-2-BENZYL-5-HYDROXYMETHYL-2-AZA-BICYCLO[2.2.2]OCTANE-4,7,8-TRIOL'>VBZ</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=VBZ:(1R,4R,5R,7R,8R)-2-BENZYL-5-HYDROXYMETHYL-2-AZA-BICYCLO[2.2.2]OCTANE-4,7,8-TRIOL'>VBZ</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2vqt|2vqt]], [[2vot|2vot]], [[2vl4|2vl4]], [[2vqu|2vqu]], [[2je8|2je8]], [[2vjx|2vjx]], [[2vmf|2vmf]]</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2vqt|2vqt]], [[2vot|2vot]], [[2vl4|2vl4]], [[2vqu|2vqu]], [[2je8|2je8]], [[2vjx|2vjx]], [[2vmf|2vmf]]</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-mannosidase Beta-mannosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.25 3.2.1.25] </span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-mannosidase Beta-mannosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.25 3.2.1.25] </span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vo5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vo5 OCA], [http://pdbe.org/2vo5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vo5 RCSB], [http://www.ebi.ac.uk/pdbsum/2vo5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vo5 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2vo5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vo5 OCA], [http://pdbe.org/2vo5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vo5 RCSB], [http://www.ebi.ac.uk/pdbsum/2vo5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vo5 ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 30: Line 30:
==See Also==
==See Also==
-
*[[Mannosidase|Mannosidase]]
+
*[[Mannosidase 3D structures|Mannosidase 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 37: Line 37:
[[Category: Bactn]]
[[Category: Bactn]]
[[Category: Beta-mannosidase]]
[[Category: Beta-mannosidase]]
 +
[[Category: Large Structures]]
[[Category: Bleriot, Y]]
[[Category: Bleriot, Y]]
[[Category: Davies, G J]]
[[Category: Davies, G J]]

Revision as of 08:14, 25 June 2020

Structural and biochemical evidence for a boat-like transition state in beta-mannosidases

PDB ID 2vo5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools