This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2yrr
From Proteopedia
(Difference between revisions)
(New page: 200px <!-- The line below this paragraph, containing "STRUCTURE_2yrr", creates the "Structure Box" on the page. You may change the PDB parameter (which sets the PD...) |
|||
| (7 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2yrr.jpg|left|200px]] | ||
| - | + | ==hypothetical alanine aminotransferase (TTH0173) from Thermus thermophilus HB8== | |
| - | + | <StructureSection load='2yrr' size='340' side='right'caption='[[2yrr]], [[Resolution|resolution]] 1.86Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2yrr]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YRR OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2YRR FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr> | |
| - | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2yri|2yri]]</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2yrr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yrr OCA], [http://pdbe.org/2yrr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yrr RCSB], [http://www.ebi.ac.uk/pdbsum/2yrr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yrr ProSAT], [http://www.topsan.org/Proteins/RSGI/2yrr TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | == | + | <jmolCheckbox> |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yr/2yrr_consurf.spt"</scriptWhenChecked> | |
| - | [[ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Goto, M | + | </jmolCheckbox> |
| - | [[Category: Hirotsu, K | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yrr ConSurf]. |
| - | [[Category: Matsumura, M | + | <div style="clear:both"></div> |
| - | [[Category: Miyahara, I | + | __TOC__ |
| - | [[Category: Omi, R | + | </StructureSection> |
| - | [[Category: | + | [[Category: Large Structures]] |
| + | [[Category: Thet8]] | ||
| + | [[Category: Goto, M]] | ||
| + | [[Category: Hirotsu, K]] | ||
| + | [[Category: Matsumura, M]] | ||
| + | [[Category: Miyahara, I]] | ||
| + | [[Category: Omi, R]] | ||
| + | [[Category: Structural genomic]] | ||
[[Category: Aminotransferase]] | [[Category: Aminotransferase]] | ||
[[Category: National project on protein structural and functional analyse]] | [[Category: National project on protein structural and functional analyse]] | ||
[[Category: Nppsfa]] | [[Category: Nppsfa]] | ||
| - | [[Category: Riken structural genomics/proteomics initiative]] | ||
[[Category: Rsgi]] | [[Category: Rsgi]] | ||
| - | [[Category: | + | [[Category: Transferase]] |
| - | + | ||
Current revision
hypothetical alanine aminotransferase (TTH0173) from Thermus thermophilus HB8
| |||||||||||
