This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2yyv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:53, 29 July 2020) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of uncharacterized conserved protein from Thermotoga maritima==
==Crystal structure of uncharacterized conserved protein from Thermotoga maritima==
-
<StructureSection load='2yyv' size='340' side='right' caption='[[2yyv]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
+
<StructureSection load='2yyv' size='340' side='right'caption='[[2yyv]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2yyv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YYV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YYV FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2yyv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thema Thema]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YYV OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2YYV FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/2-phosphosulfolactate_phosphatase 2-phosphosulfolactate phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.71 3.1.3.71] </span></td></tr>
+
</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/2-phosphosulfolactate_phosphatase 2-phosphosulfolactate phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.71 3.1.3.71] </span></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yyv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yyv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yyv RCSB], [http://www.ebi.ac.uk/pdbsum/2yyv PDBsum], [http://www.topsan.org/Proteins/RSGI/2yyv TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2yyv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yyv OCA], [http://pdbe.org/2yyv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yyv RCSB], [http://www.ebi.ac.uk/pdbsum/2yyv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yyv ProSAT], [http://www.topsan.org/Proteins/RSGI/2yyv TOPSAN]</span></td></tr>
-
<table>
+
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yy/2yyv_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yy/2yyv_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yyv ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: 2-phosphosulfolactate phosphatase]]
[[Category: 2-phosphosulfolactate phosphatase]]
-
[[Category: Thermotoga maritima]]
+
[[Category: Large Structures]]
-
[[Category: Bessho, Y.]]
+
[[Category: Thema]]
-
[[Category: Kuramitsu, S.]]
+
[[Category: Bessho, Y]]
-
[[Category: Nakagawa, N.]]
+
[[Category: Kuramitsu, S]]
-
[[Category: Nakamura, Y.]]
+
[[Category: Nakagawa, N]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Nakamura, Y]]
-
[[Category: Yokoyama, S.]]
+
[[Category: Structural genomic]]
 +
[[Category: Yokoyama, S]]
[[Category: Hydrolase]]
[[Category: Hydrolase]]
[[Category: National project on protein structural and functional analyse]]
[[Category: National project on protein structural and functional analyse]]
[[Category: Nppsfa]]
[[Category: Nppsfa]]
-
[[Category: Riken structural genomics/proteomics initiative]]
 
[[Category: Rsgi]]
[[Category: Rsgi]]
-
[[Category: Structural genomic]]
 
[[Category: Uncharacterized conserved protein]]
[[Category: Uncharacterized conserved protein]]

Current revision

Crystal structure of uncharacterized conserved protein from Thermotoga maritima

PDB ID 2yyv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools