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2yzg
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2yzg" size="350" color="white" frame="true" align="right" spinBox="true" caption="2yzg, resolution 2.30Å" /> '''Crystal structure of...) |
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| - | [[Image:2yzg.jpg|left|200px]]<br /><applet load="2yzg" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2yzg, resolution 2.30Å" /> | ||
| - | '''Crystal structure of D-ALA:D-ALA Ligase from Thermus thermophilus HB8'''<br /> | ||
| - | == | + | ==Crystal structure of D-ALA:D-ALA Ligase from Thermus thermophilus HB8== |
| - | + | <StructureSection load='2yzg' size='340' side='right'caption='[[2yzg]], [[Resolution|resolution]] 2.30Å' scene=''> | |
| - | [ | + | == Structural highlights == |
| - | [ | + | <table><tr><td colspan='2'>[[2yzg]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZG OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2YZG FirstGlance]. <br> |
| - | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/D-alanine--D-alanine_ligase D-alanine--D-alanine ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.4 6.3.2.4] </span></td></tr> | |
| - | [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2yzg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yzg OCA], [http://pdbe.org/2yzg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yzg RCSB], [http://www.ebi.ac.uk/pdbsum/2yzg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yzg ProSAT], [http://www.topsan.org/Proteins/RSGI/2yzg TOPSAN]</span></td></tr> |
| - | [ | + | </table> |
| - | [[ | + | == Function == |
| - | [ | + | [[http://www.uniprot.org/uniprot/DDL_THET8 DDL_THET8]] Cell wall formation.[HAMAP-Rule:MF_00047] |
| - | [[ | + | == Evolutionary Conservation == |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | + | <jmolCheckbox> | |
| - | [ | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yz/2yzg_consurf.spt"</scriptWhenChecked> |
| - | [[ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [ | + | <text>to colour the structure by Evolutionary Conservation</text> |
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yzg ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | + | ==See Also== | |
| + | *[[D-alanine-D-alanine ligase 3D structures|D-alanine-D-alanine ligase 3D structures]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: D-alanine--D-alanine ligase]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Thet8]] | ||
| + | [[Category: Kitamura, Y]] | ||
| + | [[Category: Kuramitsu, S]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Yokoyama, S]] | ||
| + | [[Category: Cell shape]] | ||
| + | [[Category: D-alanine:d-alanine ligase]] | ||
| + | [[Category: Ligase]] | ||
| + | [[Category: National project on protein structural and functional analyse]] | ||
| + | [[Category: Nppsfa]] | ||
| + | [[Category: Peptidoglycan synthesis]] | ||
| + | [[Category: Rsgi]] | ||
Current revision
Crystal structure of D-ALA:D-ALA Ligase from Thermus thermophilus HB8
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