This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2z00
From Proteopedia
(Difference between revisions)
m (Protected "2z00" [edit=sysop:move=sysop]) |
|||
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2z00.png|left|200px]] | ||
| - | + | ==Crystal structure of dihydroorotase from Thermus thermophilus== | |
| - | + | <StructureSection load='2z00' size='340' side='right'caption='[[2z00]], [[Resolution|resolution]] 2.42Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2z00]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z00 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2Z00 FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |
| - | == | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[2z00]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Dihydroorotase Dihydroorotase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.3 3.5.2.3] </span></td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2z00 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z00 OCA], [http://pdbe.org/2z00 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2z00 RCSB], [http://www.ebi.ac.uk/pdbsum/2z00 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2z00 ProSAT], [http://www.topsan.org/Proteins/RSGI/2z00 TOPSAN]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z0/2z00_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2z00 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Dihydroorotase]] | [[Category: Dihydroorotase]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Baba, S | + | [[Category: Thet8]] |
| - | [[Category: Kanagawa, M | + | [[Category: Baba, S]] |
| - | [[Category: Kawai, G | + | [[Category: Kanagawa, M]] |
| - | [[Category: Kuramitsu, S | + | [[Category: Kawai, G]] |
| - | [[Category: | + | [[Category: Kuramitsu, S]] |
| - | [[Category: Sampei, G | + | [[Category: Structural genomic]] |
| - | [[Category: Yokoyama, S | + | [[Category: Sampei, G]] |
| + | [[Category: Yokoyama, S]] | ||
[[Category: Hydrolase]] | [[Category: Hydrolase]] | ||
[[Category: Metal-binding]] | [[Category: Metal-binding]] | ||
| Line 22: | Line 36: | ||
[[Category: Nppsfa]] | [[Category: Nppsfa]] | ||
[[Category: Pyrimidine biosynthesis]] | [[Category: Pyrimidine biosynthesis]] | ||
| - | [[Category: Riken structural genomics/proteomics initiative]] | ||
[[Category: Rsgi]] | [[Category: Rsgi]] | ||
| - | [[Category: Structural genomic]] | ||
[[Category: Zinc binding protein]] | [[Category: Zinc binding protein]] | ||
Current revision
Crystal structure of dihydroorotase from Thermus thermophilus
| |||||||||||
Categories: Dihydroorotase | Large Structures | Thet8 | Baba, S | Kanagawa, M | Kawai, G | Kuramitsu, S | Structural genomic | Sampei, G | Yokoyama, S | Hydrolase | Metal-binding | National project on protein structural and functional analyse | Nppsfa | Pyrimidine biosynthesis | Rsgi | Zinc binding protein
