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3a3y
From Proteopedia
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of the sodium-potassium pump with bound potassium and ouabain== | |
| + | <StructureSection load='3a3y' size='340' side='right'caption='[[3a3y]], [[Resolution|resolution]] 2.80Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[3a3y]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Squalus_acanthias Squalus acanthias] and [http://en.wikipedia.org/wiki/Squalus_acanthias Squalus acanthias]. The October 2009 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Sodium-Potassium Pump'' by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2009_10 10.2210/rcsb_pdb/mom_2009_10]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A3Y OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3A3Y FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CLR:CHOLESTEROL'>CLR</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MF4:TETRAFLUOROMAGNESATE(2-)'>MF4</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=OBN:OUABAIN'>OBN</scene></td></tr> | ||
| + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2zxe|2zxe]]</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3a3y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a3y OCA], [http://pdbe.org/3a3y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a3y RCSB], [http://www.ebi.ac.uk/pdbsum/3a3y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3a3y ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a3/3a3y_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a3y ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The sodium-potassium pump (Na(+),K(+)-ATPase) is responsible for establishing Na(+) and K(+) concentration gradients across the plasma membrane and therefore plays an essential role in, for instance, generating action potentials. Cardiac glycosides, prescribed for congestive heart failure for more than 2 centuries, are efficient inhibitors of this ATPase. Here we describe a crystal structure of Na(+),K(+)-ATPase with bound ouabain, a representative cardiac glycoside, at 2.8 A resolution in a state analogous to E2.2K(+).Pi. Ouabain is deeply inserted into the transmembrane domain with the lactone ring very close to the bound K(+), in marked contrast to previous models. Due to antagonism between ouabain and K(+), the structure represents a low-affinity ouabain-bound state. Yet, most of the mutagenesis data obtained with the high-affinity state are readily explained by the present crystal structure, indicating that the binding site for ouabain is essentially the same. According to a homology model for the high affinity state, it is a closure of the binding cavity that confers a high affinity. | ||
| - | + | Crystal structure of the sodium-potassium pump (Na+,K+-ATPase) with bound potassium and ouabain.,Ogawa H, Shinoda T, Cornelius F, Toyoshima C Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):13742-7. Epub 2009 Aug 3. PMID:19666591<ref>PMID:19666591</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| + | </div> | ||
| + | <div class="pdbe-citations 3a3y" style="background-color:#fffaf0;"></div> | ||
| - | + | ==See Also== | |
| + | *[[ATPase 3D structures|ATPase 3D structures]] | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: RCSB PDB Molecule of the Month]] | ||
| + | [[Category: Sodium-Potassium Pump]] | ||
| + | [[Category: Squalus acanthias]] | ||
| + | [[Category: Cornelius, F]] | ||
| + | [[Category: Ogawa, H]] | ||
| + | [[Category: Shinoda, T]] | ||
| + | [[Category: Toyoshima, C]] | ||
| + | [[Category: Atp-binding]] | ||
| + | [[Category: Atpase]] | ||
| + | [[Category: Haloacid dehydrogenease superfamily]] | ||
| + | [[Category: Hydrolase]] | ||
| + | [[Category: Hydrolase-transport protein complex]] | ||
| + | [[Category: Ion pump]] | ||
| + | [[Category: Ion transport]] | ||
| + | [[Category: K+ binding]] | ||
| + | [[Category: Membrane]] | ||
| + | [[Category: Membrane protein]] | ||
| + | [[Category: Nucleotide-binding]] | ||
| + | [[Category: Ouabain binding]] | ||
| + | [[Category: Phosphate analogue]] | ||
| + | [[Category: Phosphoprotein]] | ||
| + | [[Category: Transmembrane]] | ||
| + | [[Category: Transport]] | ||
Current revision
Crystal structure of the sodium-potassium pump with bound potassium and ouabain
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Categories: Large Structures | RCSB PDB Molecule of the Month | Sodium-Potassium Pump | Squalus acanthias | Cornelius, F | Ogawa, H | Shinoda, T | Toyoshima, C | Atp-binding | Atpase | Haloacid dehydrogenease superfamily | Hydrolase | Hydrolase-transport protein complex | Ion pump | Ion transport | K+ binding | Membrane | Membrane protein | Nucleotide-binding | Ouabain binding | Phosphate analogue | Phosphoprotein | Transmembrane | Transport

