This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5lyz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:55, 12 August 2020) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:5lyz.jpg|left|200px]]
 
-
<!--
+
==Real-space refinement of the structure of hen egg-white lysozyme==
-
The line below this paragraph, containing "STRUCTURE_5lyz", creates the "Structure Box" on the page.
+
<StructureSection load='5lyz' size='340' side='right'caption='[[5lyz]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[5lyz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LYZ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5LYZ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5lyz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lyz OCA], [http://pdbe.org/5lyz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lyz RCSB], [http://www.ebi.ac.uk/pdbsum/5lyz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lyz ProSAT]</span></td></tr>
-
{{STRUCTURE_5lyz| PDB=5lyz | SCENE= }}
+
</table>
 +
== Function ==
 +
[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ly/5lyz_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=5lyz ConSurf].
 +
<div style="clear:both"></div>
-
'''REAL-SPACE REFINEMENT OF THE STRUCTURE OF HEN EGG-WHITE LYSOZYME'''
+
==See Also==
-
 
+
*[[Lysozyme 3D structures|Lysozyme 3D structures]]
-
 
+
== References ==
-
==About this Structure==
+
<references/>
-
5LYZ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LYZ OCA].
+
__TOC__
-
 
+
</StructureSection>
-
==Reference==
+
-
Real-space refinement of the structure of hen egg-white lysozyme., Diamond R, J Mol Biol. 1974 Jan 25;82(3):371-91. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/4856347 4856347]
+
[[Category: Gallus gallus]]
[[Category: Gallus gallus]]
 +
[[Category: Large Structures]]
[[Category: Lysozyme]]
[[Category: Lysozyme]]
-
[[Category: Single protein]]
+
[[Category: Blake, C C.F]]
-
[[Category: Blake, C C.F.]]
+
[[Category: Diamond, R]]
-
[[Category: Diamond, R.]]
+
[[Category: North, A C.T]]
-
[[Category: North, A C.T.]]
+
[[Category: Phillips, D C]]
-
[[Category: Phillips, D C.]]
+
[[Category: Hydrolase]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 22:35:48 2008''
+

Current revision

Real-space refinement of the structure of hen egg-white lysozyme

PDB ID 5lyz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools