This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ipq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:53, 19 August 2020) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ipq.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of C-terminal domain of Salmonella Enterica protein STY4665, PFAM DUF1528==
-
|PDB= 2ipq |SIZE=350|CAPTION= <scene name='initialview01'>2ipq</scene>, resolution 2.200&Aring;
+
<StructureSection load='2ipq' size='340' side='right'caption='[[2ipq]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2ipq]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IPQ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2IPQ FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|GENE= STY4665, t4356 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=601 Salmonella typhi])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2ipq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ipq OCA], [http://pdbe.org/2ipq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ipq RCSB], [http://www.ebi.ac.uk/pdbsum/2ipq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ipq ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/2ipq TOPSAN]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam07515 DUF1528]</span>
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ipq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ipq OCA], [http://www.ebi.ac.uk/pdbsum/2ipq PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2ipq RCSB]</span>
+
== Evolutionary Conservation ==
-
}}
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
'''Crystal structure of C-terminal domain of Salmonella Enterica protein STY4665, PFAM DUF1528'''
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ip/2ipq_consurf.spt"</scriptWhenChecked>
-
 
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
==About this Structure==
+
<text>to colour the structure by Evolutionary Conservation</text>
-
2IPQ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_typhi Salmonella typhi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IPQ OCA].
+
</jmolCheckbox>
-
[[Category: Salmonella typhi]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ipq ConSurf].
-
[[Category: Single protein]]
+
<div style="clear:both"></div>
-
[[Category: Almo, S C.]]
+
__TOC__
-
[[Category: Bain, K T.]]
+
</StructureSection>
-
[[Category: Bonanno, J B.]]
+
[[Category: Large Structures]]
-
[[Category: Burley, S K.]]
+
[[Category: Almo, S C]]
-
[[Category: Gilmore, J.]]
+
[[Category: Bain, K T]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[[Category: Bonanno, J B]]
-
[[Category: Ramagopal, U A.]]
+
[[Category: Burley, S K]]
-
[[Category: Reyes, C.]]
+
[[Category: Gilmore, J]]
-
[[Category: Sauder, J M.]]
+
[[Category: Structural genomic]]
-
[[Category: Toro, R.]]
+
[[Category: Ramagopal, U A]]
-
[[Category: new york structural genomix research consortium]]
+
[[Category: Reyes, C]]
-
[[Category: nysgxrc]]
+
[[Category: Sauder, J M]]
-
[[Category: protein structure initiative]]
+
[[Category: Toro, R]]
-
[[Category: psi]]
+
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-
[[Category: structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: unknown function]]
+
[[Category: Unknown function]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:32:42 2008''
+

Current revision

Crystal structure of C-terminal domain of Salmonella Enterica protein STY4665, PFAM DUF1528

PDB ID 2ipq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools