This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.

5c1y

From Proteopedia

(Difference between revisions)

Jump to: navigation, search

Revision as of 06:58, 2 September 2020

Crystal structure of EV71 3C Proteinase in complex with Compound 1

Structural highlights

5c1y is a 1 chain structure with sequence from Ev-71. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
Related:	4ghq, 4ght, 5c1u, 5c1x, 5c20
Activity:	Picornain 3C, with EC number 3.4.22.28
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[A9XG43_9ENTO] Protein 2C associates with and induces structural rearrangements of intracellular membranes. It displays RNA-binding, nucleotide binding and NTPase activities (By similarity).[SAAS:SAAS000199_004_016611] Protein 3C is a cysteine protease that generates mature viral proteins from the precursor polyprotein. In addition to its proteolytic activity, it binds to viral RNA, and thus influences viral genome replication. RNA and substrate bind co-operatively to the protease (By similarity).[SAAS:SAAS000199_004_042266] RNA-directed RNA polymerase 3D-POL replicates genomic and antigenomic RNA by recognizing replications specific signals (By similarity).[SAAS:SAAS000199_004_010047]

Publication Abstract from PubMed

Enterovirus 71 (EV71) is the causative agent of hand, foot and mouth disease and can spread its infections to the central nervous and other systems with severe consequences. The replication of EV71 depends on its 3C proteinase (3Cpro ), a significant drug target. By X-ray crystallography and functional assays, the interactions between inhibitors and EV71 3Cpro were evaluated. It was shown that improved interactions at S4 for the substrate binding could significantly enhance the potency. A new series of potent inhibitors with high ligand efficiency was generated for developing antivirals to treat and control the EV71-associated diseases. Copyright (c) 2016 John Wiley & Sons, Ltd.

Optimize the interactions at S4 with efficient inhibitors targeting 3C proteinase from enterovirus 71.,Zhang L, Huang G, Cai Q, Zhao C, Tang L, Ren H, Li P, Li N, Huang J, Chen X, Guan Y, You H, Chen S, Li J, Lin T J Mol Recognit. 2016 May 17. doi: 10.1002/jmr.2551. PMID:27185390^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Zhang L, Huang G, Cai Q, Zhao C, Tang L, Ren H, Li P, Li N, Huang J, Chen X, Guan Y, You H, Chen S, Li J, Lin T. Optimize the interactions at S4 with efficient inhibitors targeting 3C proteinase from enterovirus 71. J Mol Recognit. 2016 May 17. doi: 10.1002/jmr.2551. PMID:27185390 doi:http://dx.doi.org/10.1002/jmr.2551

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5c1y"

@@ Line 3: / Line 3: @@
 <StructureSection load='5c1y' size='340' side='right'caption='[[5c1y]], [[Resolution|resolution]] 1.97&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5c1y]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ev-71 Ev-71]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5C1Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5C1Y FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5c1y]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ev-71 Ev-71]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5C1Y OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5C1Y FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GHY:N-{(2S)-1-OXO-3-[(3S)-2-OXOPYRROLIDIN-3-YL]PROPAN-2-YL}-NALPHA-[(PROPAN-2-YLOXY)CARBONYL]-L-PHENYLALANINAMIDE'>GHY</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GHY:N-{(2S)-1-OXO-3-[(3S)-2-OXOPYRROLIDIN-3-YL]PROPAN-2-YL}-NALPHA-[(PROPAN-2-YLOXY)CARBONYL]-L-PHENYLALANINAMIDE'>GHY</scene></td></tr>
 <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ghq|4ghq]], [[4ght|4ght]], [[5c1u|5c1u]], [[5c1x|5c1x]], [[5c20|5c20]]</td></tr>
 <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Picornain_3C Picornain 3C], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.22.28 3.4.22.28] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5c1y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c1y OCA], [http://pdbe.org/5c1y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5c1y RCSB], [http://www.ebi.ac.uk/pdbsum/5c1y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5c1y ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5c1y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c1y OCA], [http://pdbe.org/5c1y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5c1y RCSB], [http://www.ebi.ac.uk/pdbsum/5c1y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5c1y ProSAT]</span></td></tr>
 </table>
 == Function ==

5c1y

From Proteopedia

Revision as of 06:58, 2 September 2020

Crystal structure of EV71 3C Proteinase in complex with Compound 1

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox