This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3e7n

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:20, 9 September 2020) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3e7n.png|left|200px]]
 
-
<!--
+
==Crystal structure of d-ribose high-affinity transport system from salmonella typhimurium lt2==
-
The line below this paragraph, containing "STRUCTURE_3e7n", creates the "Structure Box" on the page.
+
<StructureSection load='3e7n' size='340' side='right'caption='[[3e7n]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3e7n]] is a 15 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3dsa 3dsa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E7N OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3E7N FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3e7n| PDB=3e7n | SCENE= }}
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3dsa|3dsa]]</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3e7n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e7n OCA], [http://pdbe.org/3e7n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3e7n RCSB], [http://www.ebi.ac.uk/pdbsum/3e7n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3e7n ProSAT], [http://www.topsan.org/Proteins/CSGID/3e7n TOPSAN]</span></td></tr>
-
===Crystal structure of d-ribose high-affinity transport system from salmonella typhimurium lt2===
+
</table>
-
 
+
== Function ==
-
 
+
[[http://www.uniprot.org/uniprot/RBSD_SALTY RBSD_SALTY]] Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.[HAMAP-Rule:MF_01661]
-
==About this Structure==
+
== Evolutionary Conservation ==
-
3E7N is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3dsa 3dsa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E7N OCA].
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Salmonella typhimurium]]
+
Check<jmol>
-
[[Category: Single protein]]
+
<jmolCheckbox>
-
[[Category: Anderson, W.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e7/3e7n_consurf.spt"</scriptWhenChecked>
-
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Gu, M.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Joachimiak, A.]]
+
</jmolCheckbox>
-
[[Category: Maltseva, N.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e7n ConSurf].
-
[[Category: Nocek, B.]]
+
<div style="clear:both"></div>
-
[[Category: Center for structural genomics of infectious disease]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Anderson, W]]
 +
[[Category: Structural genomic]]
 +
[[Category: Gu, M]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Maltseva, N]]
 +
[[Category: Nocek, B]]
[[Category: Csgid]]
[[Category: Csgid]]
[[Category: D-ribose transport system]]
[[Category: D-ribose transport system]]
-
[[Category: Niaid structural genomics centers for infectious disease]]
 
[[Category: Rbsd]]
[[Category: Rbsd]]
-
[[Category: Structural genomic]]
 
[[Category: Transport protein]]
[[Category: Transport protein]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 17 13:06:02 2008''
 

Current revision

Crystal structure of d-ribose high-affinity transport system from salmonella typhimurium lt2

PDB ID 3e7n

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3e7n"
Personal tools