This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3eis

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:23, 9 September 2020) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3eis.png|left|200px]]
 
-
{{STRUCTURE_3eis| PDB=3eis | SCENE= }}
+
==Crystal Structure of Arylmalonate Decarboxylase==
-
 
+
<StructureSection load='3eis' size='340' side='right'caption='[[3eis]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
===Crystal Structure of Arylmalonate Decarboxylase===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3eis]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"alcaligenes_bronchicanis"_(ferry_1911)_haupt_1935 "alcaligenes bronchicanis" (ferry 1911) haupt 1935]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EIS OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3EIS FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
==About this Structure==
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE'>CME</scene></td></tr>
-
[[3eis]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bordetella_bronchiseptica Bordetella bronchiseptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EIS OCA].
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3dtv|3dtv]]</td></tr>
 +
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Arylmalonate_decarboxylase Arylmalonate decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.76 4.1.1.76] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3eis FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3eis OCA], [http://pdbe.org/3eis PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3eis RCSB], [http://www.ebi.ac.uk/pdbsum/3eis PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3eis ProSAT]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ei/3eis_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3eis ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Arylmalonate decarboxylase]]
[[Category: Arylmalonate decarboxylase]]
-
[[Category: Bordetella bronchiseptica]]
+
[[Category: Large Structures]]
-
[[Category: Miyamoto, K.]]
+
[[Category: Miyamoto, K]]
-
[[Category: Nakasako, M.]]
+
[[Category: Nakasako, M]]
-
[[Category: Obata, R.]]
+
[[Category: Obata, R]]
-
[[Category: Ohta, H.]]
+
[[Category: Ohta, H]]
[[Category: Decarboxylase]]
[[Category: Decarboxylase]]
[[Category: Enantioselective decarboxylation]]
[[Category: Enantioselective decarboxylation]]
[[Category: Lyase]]
[[Category: Lyase]]

Current revision

Crystal Structure of Arylmalonate Decarboxylase

PDB ID 3eis

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools