This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3i3h

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:52, 23 September 2020) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3i3h.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of Bothropstoxin-I crystallized at 291K==
-
The line below this paragraph, containing "STRUCTURE_3i3h", creates the "Structure Box" on the page.
+
<StructureSection load='3i3h' size='340' side='right'caption='[[3i3h]], [[Resolution|resolution]] 2.17&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3i3h]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bothrops_jararacussu Bothrops jararacussu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I3H OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3I3H FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2qog|2qog]], [[2oqd|2oqd]], [[2ok9|2ok9]], [[3i3i|3i3i]]</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3i3h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i3h OCA], [http://pdbe.org/3i3h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3i3h RCSB], [http://www.ebi.ac.uk/pdbsum/3i3h PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3i3h ProSAT]</span></td></tr>
-
{{STRUCTURE_3i3h| PDB=3i3h | SCENE= }}
+
</table>
 +
== Function ==
 +
[[http://www.uniprot.org/uniprot/PA2B1_BOTJR PA2B1_BOTJR]] Snake venom phospholipase A2 homolog that lacks enzymatic activity. In vivo, induces muscle necrosis, accompanied by polymorphonuclear cell infiltration, and edema in the mouse paw. Damages artificial and myoblast membranes by a calcium-independent mechanism. Has bactericidal activity.<ref>PMID:3176051</ref> <ref>PMID:11018293</ref> <ref>PMID:11829743</ref> <ref>PMID:12079495</ref> <ref>PMID:17346668</ref> <ref>PMID:18160090</ref> <ref>PMID:17157889</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i3/3i3h_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3i3h ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of Bothropstoxin-I crystallized at 291K===
+
==See Also==
-
 
+
*[[Phospholipase A2 3D structures|Phospholipase A2 3D structures]]
-
 
+
*[[Phospholipase A2 homolog|Phospholipase A2 homolog]]
-
==About this Structure==
+
== References ==
-
3I3H is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Bothrops_jararacussu Bothrops jararacussu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I3H OCA].
+
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Bothrops jararacussu]]
[[Category: Bothrops jararacussu]]
-
[[Category: Fontes, M R.M.]]
+
[[Category: Large Structures]]
-
[[Category: Marchi-Salvador, D P.]]
+
[[Category: Fontes, M R.M]]
-
[[Category: Salvador, G H.M.]]
+
[[Category: Marchi-Salvador, D P]]
-
[[Category: Soares, A M.]]
+
[[Category: Salvador, G H.M]]
 +
[[Category: Soares, A M]]
[[Category: Antimicrobial]]
[[Category: Antimicrobial]]
[[Category: Bothropstoxin-i]]
[[Category: Bothropstoxin-i]]
Line 30: Line 43:
[[Category: Snake venom]]
[[Category: Snake venom]]
[[Category: Toxin]]
[[Category: Toxin]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 11 23:53:15 2010''
 

Current revision

Crystal structure of Bothropstoxin-I crystallized at 291K

PDB ID 3i3h

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools