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User:Karsten Theis/Favorite 3D scenes

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(→Consideration for a BioMolViz category tag)
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</jmol> to see the hydrogen bond lengths.
</jmol> to see the hydrogen bond lengths.
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http://proteopedia.org/wiki/index.php/Cellulose#multiple%20layers%20stack
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===Conservation of residues on the surface of the helicase UvrB===
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<scene name='78/780454/Conservation/1'>3D scene</scene> and [http://proteopedia.org/w/User:Karsten_Theis/overall_views#oriented%20as%202D%20figure]
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The original figures of the primary citation used a trick to see better into the active site between domains 1a and 3: domain 3 was rotated outwards to open up the view. You can use the control below to achieve a similar effect:
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<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>select 415-600;rotateselected {558.CA}{580.CA} 120 </scriptWhenChecked>
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<scriptWhenUnchecked>select 415-600;rotateselected {558.CA}{580.CA} -120</scriptWhenUnchecked>
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<checked>false</checked>
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<text>butterflied molecule</text>
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</jmolCheckbox>
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</jmol>
</StructureSection>
</StructureSection>
 +
 +
<jmol>
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<jmolRadioGroup>
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<item>
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<script>hide (hidden and not protein) or (protein and not (1-90, 117-156, 245-414))</script>
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<text>domain 1(a+b)</text>
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</item>
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<item>
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<script>hide (hidden and not protein) or (protein and not (157-244))</script>
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<text>domain 2</text>
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</item>
 +
<item>
 +
<script>hide (hidden and not protein) or (protein and not (415-600))</script>
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<text>domain 3</text>
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</item>
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<item>
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<script>hide (hidden and not protein) or (protein and not 91-116)</script>
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<text>hairpin</text>
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</item>
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<item>
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<script>display displayed or protein</script>
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<text>all domains</text>
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<checked>true</checked>
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</item>
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</jmolRadioGroup>
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</jmol>
===Place holder===
===Place holder===

Revision as of 10:59, 9 October 2020

Consideration for a BioMolViz category tag

This is a collection of scenes I like. They show what is possible in Jmol, and they illustrate the power of biomolecular visualization particularly well. Each scene comes with one green link to show the scene on this page, and a regular link to see it in the context of the page where I found it.

Drag the structure with the mouse to rotate

Place holder

and page context

References

Proteopedia Page Contributors and Editors (what is this?)

Karsten Theis

Retrieved from "http://52.214.119.220/wiki/index.php/User:Karsten_Theis/Favorite_3D_scenes"
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