This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
User:Karsten Theis/Favorite 3D scenes
From Proteopedia
< User:Karsten Theis(Difference between revisions)
(→Consideration for a BioMolViz category tag) |
|||
| (2 intermediate revisions not shown.) | |||
| Line 72: | Line 72: | ||
<scriptWhenUnchecked>set picking identify</scriptWhenUnchecked> | <scriptWhenUnchecked>set picking identify</scriptWhenUnchecked> | ||
<checked>false</checked> | <checked>false</checked> | ||
| - | <text>click | + | <text>mouse click centers molecule</text> |
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol> | </jmol> | ||
| + | |||
| + | ===Active site of alpha-galactosidase mutant=== | ||
| + | <jmol><jmolLink><script>script "/scripts/78/786673/Fig2a_galnac_complex/2.spt"; ppdiaCaptionCmd = "changeCaption('Crystal structure of GAL(SA) bound to N-acetyl galactosamine. GAL(SA) active site residues are shown in yellow and the product, N-acetyl galactosamine, is in gray when shown. The blue mesh around the sugar represents its (2Fo-Fc) electron density.','white','black');";javascript @ppdiaCaptionCmd;model 2; model 2; hide a2g:A</script><text>3D scene</text></jmolLink></jmol> and [https://proteopedia.org/w/Garman_lab:_Interconversion_of_lysosomal_enzyme_specificities#galactose page context] | ||
| + | |||
| + | Alpha-galactosidase usually bind to galactose, but this mutant also binds to N-acetyl galactosamine. Show the model of the <jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>hide none</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>hide a2g:A</scriptWhenUnchecked> | ||
| + | <checked>false</checked> | ||
| + | <text>sugar</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol> in the active site. | ||
</StructureSection> | </StructureSection> | ||
Current revision
Consideration for a BioMolViz category tag
This is a collection of scenes I like. They show what is possible in Jmol, and they illustrate the power of biomolecular visualization particularly well. Each scene comes with one green link to show the scene on this page, and a regular link to see it in the context of the page where I found it.
| |||||||||||
Place holder
and page context
