This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3mi4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:41, 14 October 2020) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3mi4.jpg|left|200px]]
 
-
<!--
+
==Bovine trypsin at 0.8 A resolution, non-restrained refinement==
-
The line below this paragraph, containing "STRUCTURE_3mi4", creates the "Structure Box" on the page.
+
<StructureSection load='3mi4' size='340' side='right'caption='[[3mi4]], [[Resolution|resolution]] 0.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3mi4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MI4 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3MI4 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
-->
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3mfj|3mfj]]</td></tr>
-
{{STRUCTURE_3mi4| PDB=3mi4 | SCENE= }}
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3mi4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mi4 OCA], [http://pdbe.org/3mi4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3mi4 RCSB], [http://www.ebi.ac.uk/pdbsum/3mi4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3mi4 ProSAT]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mi/3mi4_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mi4 ConSurf].
 +
<div style="clear:both"></div>
-
===Bovine trypsin at 0.8 A resolution, non-restrained refinement===
+
==See Also==
-
 
+
*[[Trypsin 3D structures|Trypsin 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
3MI4 is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MI4 OCA].
+
[[Category: Bos taurus]]
[[Category: Bos taurus]]
 +
[[Category: Large Structures]]
[[Category: Trypsin]]
[[Category: Trypsin]]
-
[[Category: Brzuszkiewicz, A.]]
+
[[Category: Brzuszkiewicz, A]]
-
[[Category: Dauter, M.]]
+
[[Category: Dauter, M]]
-
[[Category: Dauter, Z.]]
+
[[Category: Dauter, Z]]
[[Category: Hydrolase]]
[[Category: Hydrolase]]
[[Category: Serine proteinase]]
[[Category: Serine proteinase]]
-
[[Category: Trypsin]]
 
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 28 11:11:50 2010''
 

Current revision

Bovine trypsin at 0.8 A resolution, non-restrained refinement

PDB ID 3mi4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools