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3nul

From Proteopedia

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{{Seed}}
 
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[[Image:3nul.png|left|200px]]
 
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<!--
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==Profilin I from Arabidopsis thaliana==
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The line below this paragraph, containing "STRUCTURE_3nul", creates the "Structure Box" on the page.
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<StructureSection load='3nul' size='340' side='right'caption='[[3nul]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3nul]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NUL OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3NUL FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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-->
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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{{STRUCTURE_3nul| PDB=3nul | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3nul FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nul OCA], [http://pdbe.org/3nul PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3nul RCSB], [http://www.ebi.ac.uk/pdbsum/3nul PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3nul ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/PROF1_ARATH PROF1_ARATH]] Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations. By binding to PIP2, it inhibits the formation of IP3 and DG (By similarity).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nu/3nul_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3nul ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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BACKGROUND: Profilins are small eukaryotic proteins involved in modulating the assembly of actin microfilaments in the cytoplasm. They are able to bind both phosphatidylinositol-4,5-bisphosphate and poly-L-proline (PLP) and thus play a critical role in signaling pathways. Plant profilins are of interest because immunological cross-reactivity between pollen and human profilin may be the cause of hay fever and broad allergies to pollens. RESULTS: The determination of the Arabidopsis thaliana profilin isoform I structure, using multiwavelength anomalous diffraction (MAD) to obtain structure-factor phases, is reported here. The structure of Arabidopsis profilin is similar to that of previously determined profilin structures. Conserved amino acid residues in profilins from plants, mammals, and lower eukaryotes are critically important in dictating the geometry of the PLP-binding site and the overall polypeptide fold. The main feature distinguishing plant profilins from other profilins is a solvent-filled pocket located in the most variable region of the fold. CONCLUSIONS: Comparison of the structures of SH3 domains with those of profilins from three distinct sources suggests that the mode of PLP binding may be similar. A comparison of three profilin structures from different families reveals only partial conservation of the actin-binding surface. The proximity of the semi-conserved actin-binding site and the binding pocket characteristic of plant profilins suggests that epitopes encompassing both features are responsible for the cross-reactivity of antibodies between human and plant profilins thought to be responsible for type I allergies.
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===PROFILIN I FROM ARABIDOPSIS THALIANA===
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The crystal structure of a major allergen from plants.,Thorn KS, Christensen HE, Shigeta R, Huddler D, Shalaby L, Lindberg U, Chua NH, Schutt CE Structure. 1997 Jan 15;5(1):19-32. PMID:9016723<ref>PMID:9016723</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3nul" style="background-color:#fffaf0;"></div>
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<!--
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_9016723}}, adds the Publication Abstract to the page
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*[[Profilin 3D Structures|Profilin 3D Structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 9016723 is the PubMed ID number.
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== References ==
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-->
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<references/>
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{{ABSTRACT_PUBMED_9016723}}
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__TOC__
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</StructureSection>
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==About this Structure==
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3NUL is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NUL OCA].
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==Reference==
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<ref group="xtra">PMID:9016723</ref><references group="xtra"/>
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[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
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[[Category: Christensen, H E.M.]]
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[[Category: Large Structures]]
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[[Category: Chua, N H.]]
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[[Category: Christensen, H E.M]]
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[[Category: Huddler, D.]]
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[[Category: Chua, N H]]
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[[Category: Lindberg, U.]]
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[[Category: Huddler, D]]
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[[Category: Schutt, C E.]]
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[[Category: Lindberg, U]]
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[[Category: Shalaby, L.]]
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[[Category: Schutt, C E]]
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[[Category: Shigeta, R.]]
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[[Category: Shalaby, L]]
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[[Category: Thorn, K.]]
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[[Category: Shigeta, R]]
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[[Category: Actin-binding protein]]
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[[Category: Thorn, K]]
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[[Category: Actin binding protein]]
[[Category: Cytoskeleton]]
[[Category: Cytoskeleton]]
[[Category: Profilin]]
[[Category: Profilin]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 06:17:10 2009''
 

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Profilin I from Arabidopsis thaliana

PDB ID 3nul

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