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Transcription initiation factors 3D structures

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Line 20: Line 20:
**[[1ro4]] - hTFIIB Zn ribbon domain – NMR<br />
**[[1ro4]] - hTFIIB Zn ribbon domain – NMR<br />
**[[1ais]], [[1d3u]] - TFIIB C terminal + TBP + DNA – ''Pyrococcus woesei''<br />
**[[1ais]], [[1d3u]] - TFIIB C terminal + TBP + DNA – ''Pyrococcus woesei''<br />
-
**[[1pft]] – TFIIB N terminal – ''Pyrococcus furiosus'' – NMR<BR />
+
**[[1pft]] – PfTFIIB N terminal – ''Pyrococcus furiosus'' – NMR<BR />
**[[5o9j]], [[5o9i]] - TFIIB – ''Methanocaldococcus jannaschii'' <br />
**[[5o9j]], [[5o9i]] - TFIIB – ''Methanocaldococcus jannaschii'' <br />
Line 40: Line 40:
**[[6fic]] – hTFIID subunit 1 + inhibitor<br />
**[[6fic]] – hTFIID subunit 1 + inhibitor<br />
**[[3uv5]] – hTFIID subunit 1 bromodomain 1-2<br />
**[[3uv5]] – hTFIID subunit 1 bromodomain 1-2<br />
-
**[[3uv4]] – hTFIID subunit 1 bromodomain 2<br />
+
**[[3uv4]] – hTFIID subunit 1 bromodomain 2 1501-1635<br />
-
**[[6bqd]] – hTFIID subunit 1 bromodomain 2 + inhibitor <br />
+
**[[6bqd]], [[5mg2]], [[6p38]], [[6p3a]], [[6p39]] – hTFIID subunit 1 bromodomain 2 + inhibitor <br />
**[[3aad]] – hTFIID subunit 1 bromodomain 1-2 + histone chaperone ASF1A<br />
**[[3aad]] – hTFIID subunit 1 bromodomain 1-2 + histone chaperone ASF1A<br />
**[[5mg2]] – hTFIID subunit 1 bromodomain 2 + inhibitor<br />
**[[5mg2]] – hTFIID subunit 1 bromodomain 2 + inhibitor<br />
**[[4yym]], [[4yyn]] – hTFIID subunit 1 bromodomain 2 + histone peptide<br />
**[[4yym]], [[4yyn]] – hTFIID subunit 1 bromodomain 2 + histone peptide<br />
-
**[[5c13]], [[5wxg]], [[5mxy]] – hTFIID subunit 3 PHD finger + histone peptide<br />
 
-
**[[5wxh]] – hTFIID subunit 3 PHD finger + histone peptide<br />
 
**[[5i1q]], [[5i29]] – hTFIID subunit 1 bromodomain 2 + pyrrolopyridone<br />
**[[5i1q]], [[5i29]] – hTFIID subunit 1 bromodomain 2 + pyrrolopyridone<br />
-
**[[5eg2]] - hTFIID subunit 10 + SETD7 + SAH<br />
+
**[[5c13]], [[5wxg]], [[5wxh]], [[5mxy]] – hTFIID subunit 3 PHD finger + histone peptide<br />
 +
**[[5wxh]] – hTFIID subunit 3 PHD finger + histone peptide<br />
**[[4wv4]] - hTFIID subunits 8+10 <br />
**[[4wv4]] - hTFIID subunits 8+10 <br />
**[[4grw]] - hTFIID subunits 1+7 <br />
**[[4grw]] - hTFIID subunits 1+7 <br />
-
**[[6f39]] - hTFIID subunits 5+6+9 <br />
+
**[[6f3t]] - hTFIID subunits 5+6+9 <br />
**[[6mzl]] - hTFIID subunits 1-13 + TBP – Cryo EM<br />
**[[6mzl]] - hTFIID subunits 1-13 + TBP – Cryo EM<br />
**[[6mzd]] - hTFIID subunits 1,3-6,9-13 + TBP – Cryo EM<br />
**[[6mzd]] - hTFIID subunits 1,3-6,9-13 + TBP – Cryo EM<br />
Line 61: Line 60:
**[[4oy2]] - yTFIID subunits 1+7 <br />
**[[4oy2]] - yTFIID subunits 1+7 <br />
**[[6mip]] - yTFIID subunits 14 <br />
**[[6mip]] - yTFIID subunits 14 <br />
-
**[[5iok]], [[5o7e]], [[6miq]], [[6mio]], [[6min]] – yTFIID subunit 14 + histone peptide<br />
+
**[[6lqz]] - yTFIID subunit 14 + STH1EBMC - NMR<br />
 +
**[[5iok]], [[5d7e]], [[6miq]], [[6mio]], [[6min]] – yTFIID subunit 14 YEATS domain 1-137 + histone peptide<br />
**[[6t9j]] - yTFIID subunit 12 + Spt20 + transcription-associated protein – Cryo EM <br />
**[[6t9j]] - yTFIID subunit 12 + Spt20 + transcription-associated protein – Cryo EM <br />
**[[6t9k]], [[6t9i]] - yTFIID in SAGA complex – Cryo EM <br />
**[[6t9k]], [[6t9i]] - yTFIID in SAGA complex – Cryo EM <br />
-
**[[6tbm]], [[6tb4]] - TFIID in SAGA complex – ''Komagataella phaffii'' – Cryo EM <br />
+
**[[6tbm]], [[6tb4]], [[6hqa]] - TFIID in SAGA complex – ''Komagataella phaffii'' – Cryo EM <br />
*TFIIE
*TFIIE
-
**[[5gpy]] - hTFIIE subunits α+β<br />
+
**[[5gpy]] - hTFIIE subunits α 1-217+β 141-217<br />
-
**[[1vd4]] - hTFIIE Zn finger domain – NMR<br />
+
**[[1vd4]] - hTFIIE Zn finger domain 113-174 – NMR<br />
-
**[[2rnq]] – hTFIIE C terminal - NMR<br />
+
**[[2rnq]] – hTFIIE C terminal 378-439 - NMR<br />
**[[2rnr]] – hTFIIE C terminal + TFIIH PH domain- NMR<br />
**[[2rnr]] – hTFIIE C terminal + TFIIH PH domain- NMR<br />
 +
**[[6xjf]], [[6pln]] – PfTFIIE-a <br />
*TFIIF
*TFIIF
Line 81: Line 82:
**[[1onv]] – hTFIIF C terminal + serine phosphatase peptide - NMR<br />
**[[1onv]] – hTFIIF C terminal + serine phosphatase peptide - NMR<br />
**[[2k7l]] – hTFIIF C terminal + FCP1 peptide - NMR<br />
**[[2k7l]] – hTFIIF C terminal + FCP1 peptide - NMR<br />
 +
 +
*TFIIH
 +
 +
**[[5ivw]], [[6o9m]] – hTFIIH in preinitiation complex – Cryo EM<br />
*TF in RNA polymerase II
*TF in RNA polymerase II
Line 88: Line 93:
**[[5fz5]], [[6gym]], [[6gyl]] – yTFIIA + yTFIIE + yTFIIF + DNA – Cryo EM<br />
**[[5fz5]], [[6gym]], [[6gyl]] – yTFIIA + yTFIIE + yTFIIF + DNA – Cryo EM<br />
**[[6gyk]] – yTFIIA + yTFIIB + yTFIIF + DNA – Cryo EM<br />
**[[6gyk]] – yTFIIA + yTFIIB + yTFIIF + DNA – Cryo EM<br />
 +
**[[5sva]] – yTFIIA + yTFIIB + yTFIIE + yTFIIF + DNA – Cryo EM<br />
**[[4v1o]], [[4v1n]] – yTFIIB + yTFIIF – Cryo EM<br />
**[[4v1o]], [[4v1n]] – yTFIIB + yTFIIF – Cryo EM<br />
**[[3k1f]], [[3k7a]], [[4bbr]], [[4bbs]] – yTFIIB <br />
**[[3k1f]], [[3k7a]], [[4bbr]], [[4bbs]] – yTFIIB <br />
-
**[[5fmf]], [[5sva]], [[5oqj]], [[5oqm]] – yTFIIA + yTFIIB + yTFIIE + yTFIIF + yTFIIH + DNA – Cryo EM<br />
+
**[[5fmf]], [[5oqj]], [[5oqm]] – yTFIIA + yTFIIB + yTFIIE + yTFIIF + yTFIIH + DNA – Cryo EM<br />
 +
**[[6kf4]], [[6kf9]] – TFIIF – ''Thermococcus kodakarensis'' - Cryo EM<br />
-
*TF RRN in RNA polymerase I
+
*TF RRN or RNA polymerase I-specific transcription initiation factor RRN
-
**[[5o7x]] – yTF RRN6+RRN7+RRN11 <br />
+
**[[3tj1]] – yTF RRN3 <br />
**[[5g5l]] – yTF RRN3 in RNA polymerase I<br />
**[[5g5l]] – yTF RRN3 in RNA polymerase I<br />
**[[6rrd]], [[6rqt]] – yTF RRN3 in RNA polymerase I – Cryo EM<br />
**[[6rrd]], [[6rqt]] – yTF RRN3 in RNA polymerase I – Cryo EM<br />
 +
**[[5o7x]] – yTF RRN6+RRN7+RRN11 <br />
**[[6ruo]] – yTF RRN3+RRN6+RRN11 in RNA polymerase I – Cryo EM<br />
**[[6ruo]] – yTF RRN3+RRN6+RRN11 in RNA polymerase I – Cryo EM<br />
**[[5w66]], [[5w65]], [[5w64]], [[5w5y]], [[5oa1]] – yTF RRN6+RRN7+RRN11 in RNA polymerase I – Cryo EM<br />
**[[5w66]], [[5w65]], [[5w64]], [[5w5y]], [[5oa1]] – yTF RRN6+RRN7+RRN11 in RNA polymerase I – Cryo EM<br />

Revision as of 09:28, 8 December 2020

3D structures of transcription initiation factors

Updated on 08-December-2020 - For a general description of the protein see Transcription initiation factor

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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