1dbf

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[[Image:1dbf.gif|left|200px]]
[[Image:1dbf.gif|left|200px]]
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{{Structure
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<!--
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|PDB= 1dbf |SIZE=350|CAPTION= <scene name='initialview01'>1dbf</scene>, resolution 1.30&Aring;
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The line below this paragraph, containing "STRUCTURE_1dbf", creates the "Structure Box" on the page.
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|SITE=
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Chorismate_mutase Chorismate mutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.99.5 5.4.99.5] </span>
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or leave the SCENE parameter empty for the default display.
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|GENE=
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-->
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|DOMAIN=
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{{STRUCTURE_1dbf| PDB=1dbf | SCENE= }}
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|RELATEDENTRY=
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dbf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dbf OCA], [http://www.ebi.ac.uk/pdbsum/1dbf PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1dbf RCSB]</span>
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}}
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'''CHORISMATE MUTASE FROM BACILLUS SUBTILIS AT 1.30 ANGSTROM'''
'''CHORISMATE MUTASE FROM BACILLUS SUBTILIS AT 1.30 ANGSTROM'''
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[[Category: Gilliland, G L.]]
[[Category: Gilliland, G L.]]
[[Category: Ladner, J E.]]
[[Category: Ladner, J E.]]
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[[Category: chorismate mutase]]
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[[Category: Chorismate mutase]]
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[[Category: shikimate pathway]]
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[[Category: Shikimate pathway]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May 2 13:39:19 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 19:38:14 2008''
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Revision as of 10:39, 2 May 2008

Template:STRUCTURE 1dbf

CHORISMATE MUTASE FROM BACILLUS SUBTILIS AT 1.30 ANGSTROM


Overview

The crystal structure of the Bacillus subtilis chorismate mutase, an enzyme of the aromatic amino acids biosynthetic pathway, was determined to 1.30 A resolution. The structure of the homotrimer was determined by molecular replacement using orthorhombic crystals of space group P2(1)2(1)2(1) with unit-cell parameters a = 52.2, b = 83. 8, c = 86.0 A. The ABC trimer of the monoclinic crystal structure [Chook et al. (1994), J. Mol. Biol. 240, 476-500] was used as the starting model. The final coordinates are composed of three complete polypeptide chains of 127 amino-acid residues. In addition, there are nine sulfate ions, five glycerol molecules and 424 water molecules clearly visible in the structure. This structure was refined with aniosotropic temperature factors, has excellent geometry and a crystallographic R factor of 0.169 with an R(free) of 0.236. The three active sites of the macromolecule are at the subunit interfaces, with residues from two subunits contributing to each site. This orthorhombic crystal form was grown using ammonium sulfate as the precipitant; glycerol was used as a cryoprotectant during data collection. A glycerol molecule and sulfate ion in each of the active sites was found mimicking a transition-state analog. In this structure, the C-terminal tails of the subunits of the trimer are hydrogen bonded to residues of the active site of neighboring trimers in the crystal and thus cross-link the molecules in the crystal lattice.

About this Structure

1DBF is a Single protein structure of sequence from Bacillus subtilis. Full crystallographic information is available from OCA.

Reference

The 1.30 A resolution structure of the Bacillus subtilis chorismate mutase catalytic homotrimer., Ladner JE, Reddy P, Davis A, Tordova M, Howard AJ, Gilliland GL, Acta Crystallogr D Biol Crystallogr. 2000 Jun;56(Pt 6):673-83. PMID:10818343 Page seeded by OCA on Fri May 2 13:39:19 2008

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