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1v5w

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Revision as of 07:32, 30 December 2020

Crystal structure of the human Dmc1 protein

Structural highlights

1v5w is a 2 chain structure with sequence from Human. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Gene:	DMC1 (HUMAN)
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

[DMC1_HUMAN] May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

The human Dmc1 protein, a RecA/Rad51 homolog, is a meiosis-specific DNA recombinase that catalyzes homologous pairing. RecA and Rad51 form helical filaments, while Dmc1 forms an octameric ring. In the present study, we crystallized the full-length human Dmc1 protein and solved the structure of the Dmc1 octameric ring. The monomeric structure of the Dmc1 protein closely resembled those of the human and archaeal Rad51 proteins. In addition to the polymerization motif that was previously identified in the Rad51 proteins, we found another hydrogen bonding interaction at the polymer interface, which could explain why Dmc1 forms stable octameric rings instead of helical filaments. Mutagenesis studies identified the inner and outer basic patches that are important for homologous pairing. The inner patch binds both single-stranded and double-stranded DNAs, while the outer one binds single-stranded DNA. Based on these results, we propose a model for the interaction of the Dmc1 rings with DNA.

Structural basis for octameric ring formation and DNA interaction of the human homologous-pairing protein Dmc1.,Kinebuchi T, Kagawa W, Enomoto R, Tanaka K, Miyagawa K, Shibata T, Kurumizaka H, Yokoyama S Mol Cell. 2004 May 7;14(3):363-74. PMID:15125839^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Kinebuchi T, Kagawa W, Enomoto R, Tanaka K, Miyagawa K, Shibata T, Kurumizaka H, Yokoyama S. Structural basis for octameric ring formation and DNA interaction of the human homologous-pairing protein Dmc1. Mol Cell. 2004 May 7;14(3):363-74. PMID:15125839

1 Structural highlights
2 Function
3 Evolutionary Conservation
4 Publication Abstract from PubMed
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1v5w"

@@ Line 1: / Line 1: @@
 ==Crystal structure of the human Dmc1 protein==
-<StructureSection load='1v5w' size='340' side='right' caption='[[1v5w]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
+<StructureSection load='1v5w' size='340' side='right'caption='[[1v5w]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1v5w]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V5W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V5W FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1v5w]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V5W OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1V5W FirstGlance]. <br>
 </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DMC1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v5w OCA], [http://pdbe.org/1v5w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v5w RCSB], [http://www.ebi.ac.uk/pdbsum/1v5w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1v5w ProSAT], [http://www.topsan.org/Proteins/RSGI/1v5w TOPSAN]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1v5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v5w OCA], [http://pdbe.org/1v5w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v5w RCSB], [http://www.ebi.ac.uk/pdbsum/1v5w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1v5w ProSAT], [http://www.topsan.org/Proteins/RSGI/1v5w TOPSAN]</span></td></tr>
 </table>
 == Function ==
@@ Line 33: / Line 33: @@
 </StructureSection>
 [[Category: Human]]
+[[Category: Large Structures]]
 [[Category: Enomoto, R]]
 [[Category: Ikawa, S]]

1v5w

From Proteopedia

Revision as of 07:32, 30 December 2020

Crystal structure of the human Dmc1 protein

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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