Ubiquitin

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Line 23: Line 23:
**[[2zcb]], [[2gbj]], [[2gbk]], [[2gbm]], [[2gbn]], [[2gbr]], [[2fcm]], [[2fcn]], [[2fcs]], [[1yiw]], [[1yj1]], [[1sif]], [[1ogw]], [[4hk2]], [[4hjk]], [[4pij]], [[4pih]], [[4pig]] - hUBB (mutant)<br />
**[[2zcb]], [[2gbj]], [[2gbk]], [[2gbm]], [[2gbn]], [[2gbr]], [[2fcm]], [[2fcn]], [[2fcs]], [[1yiw]], [[1yj1]], [[1sif]], [[1ogw]], [[4hk2]], [[4hjk]], [[4pij]], [[4pih]], [[4pig]] - hUBB (mutant)<br />
**[[2kn5]], [[2klg]], [[2jzz]], [[2pe9]], [[2pea]], [[1g6j]], [[1d3z]], [[2kox]], [[2ld9]], [[2k25]], [[5ujl]], [[6v5d]] – hUBB – NMR<br />
**[[2kn5]], [[2klg]], [[2jzz]], [[2pe9]], [[2pea]], [[1g6j]], [[1d3z]], [[2kox]], [[2ld9]], [[2k25]], [[5ujl]], [[6v5d]] – hUBB – NMR<br />
-
**[[1c3t]], [[1ud7]], [[2mi8]], [[2rsu]], [[2ru6]], [[6k4i]] - hUBB (mutant) - NMR<br />
+
**[[1c3t]], [[1ud7]], [[2mi8]], [[2rsu]], [[2ru6]], [[6k4i]], [[5zd0]] - hUBB (mutant) - NMR<br />
**[[2m0x]] - hUBB - engineered – NMR<br />
**[[2m0x]] - hUBB - engineered – NMR<br />
**[[6gf1]] - hUBB D<br />
**[[6gf1]] - hUBB D<br />
Line 76: Line 76:
* Ubiquitin trimer
* Ubiquitin trimer
-
**[[5go7]], [[5gok]], [[5jby]], [[5jbv]], [[6oq1]] – hTriUBB <br />
+
**[[5go7]], [[5gok]], [[5jby]], [[5jbv]], [[6oq1]], [[7cap]] – hTriUBB <br />
**[[3zlz]], [[5o44]] – hTriUBB (mutant) <br />
**[[3zlz]], [[5o44]] – hTriUBB (mutant) <br />
**[[6oq2]] – hTriUBB - NMR<br />
**[[6oq2]] – hTriUBB - NMR<br />
Line 84: Line 84:
* Ubiquitin tetramer
* Ubiquitin tetramer
-
**[[5go8]] – hTetraUBB <br />
+
**[[5go8]], [[5xdp]] – hTetraUBB <br />
**[[3tmp]] – hTetraUBB + deubiquitinase<br />
**[[3tmp]] – hTetraUBB + deubiquitinase<br />
**[[3alb]], [[3hm3]], [[2o6v]], [[1f9j]], [[1tbe]] – tetra-hUBB<br />
**[[3alb]], [[3hm3]], [[2o6v]], [[1f9j]], [[1tbe]] – tetra-hUBB<br />
Line 93: Line 93:
* Polyubiquitin-B
* Polyubiquitin-B
-
**[[6nxl]] – hUBB<br />
+
**[[6nxl]], [[5x3n]] – hUBB<br />
**[[4zpz]], [[6qk9]], [[5w46]] – hUBB (mutant)<br />
**[[4zpz]], [[6qk9]], [[5w46]] – hUBB (mutant)<br />
-
**[[5x3o]], [[3x3m]] – hUBB + d-ubiquitin <br />
+
**[[5xk5]], [[6kow]], [[6kox]], [[6qf8]] – hUBB - NMR<br />
 +
**[[5x3m]], [[5x3o]], [[3x3m]] – hUBB + d-ubiquitin <br />
**[[3phd]] – hUBB + histone deacetylase 6
**[[3phd]] – hUBB + histone deacetylase 6
**[[3znh]] – hUBB + UBB thioesterase<br />
**[[3znh]] – hUBB + UBB thioesterase<br />
 +
**[[7jms]] – hUBB + UBB replicase<br />
**[[5ydr]] – hUBB + DNMT1<br />
**[[5ydr]] – hUBB + DNMT1<br />
-
**[[6fdk]] – hUBB + DUB1<br />
+
**[[6fdk]], [[6gzs]] – hUBB + Dub1<br />
**[[6ei1]], [[6fge]] – hUBB + ZUP1<br />
**[[6ei1]], [[6fge]] – hUBB + ZUP1<br />
 +
**[[6ei1]] – hUBB + ZUFSP<br />
**[[6cp2]] – hUBB + UbcH7 + SidC<br />
**[[6cp2]] – hUBB + UbcH7 + SidC<br />
**[[6bva]], [[6byh]], [[6c16]] – hUBB + SKP1 + FBL10<br />
**[[6bva]], [[6byh]], [[6c16]] – hUBB + SKP1 + FBL10<br />
Line 132: Line 135:
**[[4k1r]] – hUBC + SST2<br />
**[[4k1r]] – hUBC + SST2<br />
**[[5oe7]] – hUBC + otulin<br />
**[[5oe7]] – hUBC + otulin<br />
 +
**[[6kbe]] – hUBC + UBB thioesterase<br />
**[[6b7m]], [[6b70]] – hUBC + SDED<br />
**[[6b7m]], [[6b70]] – hUBC + SDED<br />
**[[6aqr]] – hUBC + SAGA + UBP8 + SGF11 + SUS1 + SGF73<br />
**[[6aqr]] – hUBC + SAGA + UBP8 + SGF11 + SUS1 + SGF73<br />
Line 139: Line 143:
**[[6rya]] – hUBC + Dup1<br />
**[[6rya]] – hUBC + Dup1<br />
**[[6b7o]] – hUBC + SdeD<br />
**[[6b7o]] – hUBC + SdeD<br />
 +
**[[6ypt]] – hUBC + RNA replicase<br />
 +
**[[6tnf]] – hUBC + FANCI + FANCD2 + DNA - Cryo EM<br />
* Ubiquitin monomer bound to protein
* Ubiquitin monomer bound to protein
Line 151: Line 157:
**[[2z59]] – hUBB+mProtein Adhesion-regulating molecule 1<br />
**[[2z59]] – hUBB+mProtein Adhesion-regulating molecule 1<br />
**[[2jy6]] – hUBB+hUbiquilin – NMR<br />
**[[2jy6]] – hUBB+hUbiquilin – NMR<br />
-
**[[3by4]], [[3c0r]] – hUBB+yUBB thioesterase<br />
+
**[[3by4]], [[3c0r]], [[6k9p]] – hUBB+ UBB thioesterase<br />
**[[2hth]] – hUBB+vacuolar protein sorting protein<br />
**[[2hth]] – hUBB+vacuolar protein sorting protein<br />
**[[1s1q]] – hUBB+tumor susceptibility gene 101 protein<br />
**[[1s1q]] – hUBB+tumor susceptibility gene 101 protein<br />
Line 188: Line 194:
**[[6b7m]] – hUBB + SdeD<br />
**[[6b7m]] – hUBB + SdeD<br />
**[[5ydr]] – hUBB + DNMT1<br />
**[[5ydr]] – hUBB + DNMT1<br />
 +
**[[5xpk]] – hUBB + D-UBB<br />
**[[6ob1]] – hUBB + WHB - NMR<br />
**[[6ob1]] – hUBB + WHB - NMR<br />
**[[4un2]] – hUBB + Dsk2 peptide<br />
**[[4un2]] – hUBB + Dsk2 peptide<br />
Line 205: Line 212:
**[[4msq]], [[4msm]] – hUBB + AMSH-like protease<br />
**[[4msq]], [[4msm]] – hUBB + AMSH-like protease<br />
**[[6upu]] – hUBB + otDUB<br />
**[[6upu]] – hUBB + otDUB<br />
-
**[[6ttu]] – hUBB in cullin-ring-ube2d assembly - Cryo EM<br />
+
**[[6pgv]] – hUBB + Josephine 2<br />
**[[4m0w]] – bUBB + replicase polyprotein<br />
**[[4m0w]] – bUBB + replicase polyprotein<br />
**[[1uzx]] – bUBB+VPS23 UEV<br />
**[[1uzx]] – bUBB+VPS23 UEV<br />
Line 233: Line 240:
**[[5v1z]], [[5v1y]], [[6oi4]] – hUBB + RPN13 + RPN2<br />
**[[5v1z]], [[5v1y]], [[6oi4]] – hUBB + RPN13 + RPN2<br />
**[[6eqi]] – hUBB + Nb696 + PINK1<br />
**[[6eqi]] – hUBB + Nb696 + PINK1<br />
-
**[[5wvo]] – hUBB + DNMT1 + histone H3.1<br />
+
**[[5wvo]], [[6pzv]] – hUBB + DNMT1 + histone<br />
**[[6oaa]], [[6oa9]] – yUBB + Npl4 + cdc48 - Cryo EM<br />
**[[6oaa]], [[6oa9]] – yUBB + Npl4 + cdc48 - Cryo EM<br />
 +
**[[6t9l]] – hUBB in SAGA DUB module - Cryo EM<br />
 +
**[[6wjd]], [[6wjn]], [[6ef0]], [[6ef1]], [[6ef2]] – hUBB in 26S proteasome - Cryo EM<br />
 +
**[[6ttu]] – hUBB in cullin-ring-ube2d assembly - Cryo EM<br />
 +
**[[6nj9]], [[6nog]], [[6nqa]], [[6jma]], [[6ven]], [[6j99]] – hUBB in nucleosome - Cryo EM<br />
 +
**[[6xiq]] – hUBB (mutant) in ribosome - Cryo EM<br />
 +
**[[6vae]], [[6vaf]] – hUBB + FANCI + FANCD2 + DNA<br />
* Ubiquitin complex with ubiquitination enzymes
* Ubiquitin complex with ubiquitination enzymes

Revision as of 10:22, 3 January 2021

Human ubiquitin (green) complex with ubiquitin-conjugating enzyme E2 (deep sky blue), 3k9p

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3D Structures of Ubiquitin

Updated on 03-January-2021

References

  1. ↑ Hershko A, Ciechanover A. The ubiquitin system. Annu Rev Biochem. 1998;67:425-79. PMID:9759494 doi:http://dx.doi.org/10.1146/annurev.biochem.67.1.425
  2. ↑ Paul S. Dysfunction of the ubiquitin-proteasome system in multiple disease conditions: therapeutic approaches. Bioessays. 2008 Nov;30(11-12):1172-84. doi: 10.1002/bies.20852. PMID:18937370 doi:http://dx.doi.org/10.1002/bies.20852
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