This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1zpl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==E. coli F17a-G lectin domain complex with GlcNAc(beta1-O)Me==
==E. coli F17a-G lectin domain complex with GlcNAc(beta1-O)Me==
-
<StructureSection load='1zpl' size='340' side='right' caption='[[1zpl]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
+
<StructureSection load='1zpl' size='340' side='right'caption='[[1zpl]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1zpl]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZPL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZPL FirstGlance]. <br>
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZPL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZPL FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MAG:BETA-METHYL-N-ACETYL-D-GLUCOSAMINE'>MAG</scene></td></tr>
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zpl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zpl OCA], [https://pdbe.org/1zpl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zpl RCSB], [https://www.ebi.ac.uk/pdbsum/1zpl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zpl ProSAT]</span></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1o9v|1o9v]]</td></tr>
+
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">F17G AF022140 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zpl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zpl OCA], [http://pdbe.org/1zpl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zpl RCSB], [http://www.ebi.ac.uk/pdbsum/1zpl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1zpl ProSAT]</span></td></tr>
+
</table>
</table>
-
== Function ==
 
-
[[http://www.uniprot.org/uniprot/F17AG_ECOLX F17AG_ECOLX]] Essential fimbrial adhesion factor that mediates binding to N-acetylglucosamine-containing receptors in the host intestinal microvilli, leading to colonization of the intestinal tissue, and diarrhea or septicemia. Also confers adhesiveness to laminin and basement membranes.
 
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
Since the introduction of structural genomics, the protein has been recognized as the most important variable in crystallization. Recent strategies to modify a protein to improve crystal quality have included rationally engineered point mutations, truncations, deletions and fusions. Five naturally occurring variants, differing in 1-18 amino acids, of the 177-residue lectin domain of the F17G fimbrial adhesin were expressed and purified in identical ways. For four out of the five variants crystals were obtained, mostly in non-isomorphous space groups, with diffraction limits ranging between 2.4 and 1.1 A resolution. A comparative analysis of the crystal-packing contacts revealed that the variable amino acids are often involved in lattice contacts and a single amino-acid substitution can suffice to radically change crystal packing. A statistical approach proved reliable to estimate the compatibilities of the variant sequences with the observed crystal forms. In conclusion, natural variation, universally present within prokaryotic species, is a valuable genetic resource that can be favourably employed to enhance the crystallization success rate with considerably less effort than other strategies.
 
-
Impact of natural variation in bacterial F17G adhesins on crystallization behaviour.,Buts L, Wellens A, Van Molle I, Wyns L, Loris R, Lahmann M, Oscarson S, De Greve H, Bouckaert J Acta Crystallogr D Biol Crystallogr. 2005 Aug;61(Pt 8):1149-59. Epub 2005, Jul 20. PMID:16041081<ref>PMID:16041081</ref>
+
==See Also==
-
 
+
*[[Adhesin 3D structures|Adhesin 3D structures]]
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 1zpl" style="background-color:#fffaf0;"></div>
+
-
== References ==
+
-
<references/>
+
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus coli migula 1895]]
+
[[Category: Large Structures]]
-
[[Category: Bouckaert, J]]
+
[[Category: Bouckaert J]]
-
[[Category: Buts, L]]
+
[[Category: Buts L]]
-
[[Category: Greve, H De]]
+
[[Category: De Greve H]]
-
[[Category: Lahmann, M]]
+
[[Category: Lahmann M]]
-
[[Category: Loris, R]]
+
[[Category: Loris R]]
-
[[Category: Molle, I Van]]
+
[[Category: Oscarson S]]
-
[[Category: Oscarson, S]]
+
[[Category: Van Molle I]]
-
[[Category: Wellens, A]]
+
[[Category: Wellens A]]
-
[[Category: Wyns, L]]
+
[[Category: Wyns L]]
-
[[Category: Bacterial adhesion]]
+
-
[[Category: Cell adhesion]]
+
-
[[Category: Fimbriae]]
+
-
[[Category: Lectin]]
+
-
[[Category: Protein-sugar complex]]
+

Revision as of 11:29, 3 February 2021

E. coli F17a-G lectin domain complex with GlcNAc(beta1-O)Me

PDB ID 1zpl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools