This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ehf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:07, 10 February 2021) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ehf.jpg|left|200px]]
 
-
{{Structure
+
==Solution structure of the third Sushi domain from human CUB and sushi domain-containing protein 1==
-
|PDB= 2ehf |SIZE=350|CAPTION= <scene name='initialview01'>2ehf</scene>
+
<StructureSection load='2ehf' size='340' side='right'caption='[[2ehf]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2ehf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EHF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EHF FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CSMD1, KIAA1890 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
-
|GENE= CSMD1, KIAA1890 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ehf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ehf OCA], [https://pdbe.org/2ehf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ehf RCSB], [https://www.ebi.ac.uk/pdbsum/2ehf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ehf ProSAT], [https://www.topsan.org/Proteins/RSGI/2ehf TOPSAN]</span></td></tr>
-
|DOMAIN=
+
</table>
-
|RELATEDENTRY=
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ehf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ehf OCA], [http://www.ebi.ac.uk/pdbsum/2ehf PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2ehf RCSB]</span>
+
[[https://www.uniprot.org/uniprot/CSMD1_HUMAN CSMD1_HUMAN]] Potential suppressor of squamous cell carcinomas.
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Solution structure of the third Sushi domain from human CUB and sushi domain-containing protein 1'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eh/2ehf_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
2EHF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EHF OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Homo sapiens]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ehf ConSurf].
-
[[Category: Hayashi, F.]]
+
<div style="clear:both"></div>
-
[[Category: Inoue, K.]]
+
__TOC__
-
[[Category: Nagashima, T.]]
+
</StructureSection>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Human]]
-
[[Category: Yokoyama, S.]]
+
[[Category: Large Structures]]
-
[[Category: csmd1]]
+
[[Category: Hayashi, F]]
-
[[Category: cub and sushi domain-containing protein 1 precursor]]
+
[[Category: Inoue, K]]
-
[[Category: cub and sushi multiple domains protein 1]]
+
[[Category: Nagashima, T]]
-
[[Category: immune system]]
+
[[Category: Structural genomic]]
-
[[Category: national project on protein structural and functional analyse]]
+
[[Category: Yokoyama, S]]
-
[[Category: nppsfa]]
+
[[Category: Csmd1]]
-
[[Category: riken structural genomics/proteomics initiative]]
+
[[Category: Cub and sushi domain-containing protein 1 precursor]]
-
[[Category: rsgi]]
+
[[Category: Cub and sushi multiple domains protein 1]]
-
[[Category: structural genomic]]
+
[[Category: Immune system]]
-
[[Category: sushi domain]]
+
[[Category: National project on protein structural and functional analyse]]
-
 
+
[[Category: Nppsfa]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:49:07 2008''
+
[[Category: Rsgi]]
 +
[[Category: Sushi domain]]

Current revision

Solution structure of the third Sushi domain from human CUB and sushi domain-containing protein 1

PDB ID 2ehf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools