This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2fa8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:14, 24 February 2021) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2fa8.gif|left|200px]]
 
-
{{Structure
+
==Crystal Structure of the Putative Selenoprotein W-related family Protein from Agrobacterium tumefaciens==
-
|PDB= 2fa8 |SIZE=350|CAPTION= <scene name='initialview01'>2fa8</scene>, resolution 1.90&Aring;
+
<StructureSection load='2fa8' size='340' side='right'caption='[[2fa8]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2fa8]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrfc Agrfc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FA8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FA8 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|GENE= atu0228 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=358 Agrobacterium tumefaciens])
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">atu0228 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 AGRFC])</td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3526 COG3526]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fa8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fa8 OCA], [https://pdbe.org/2fa8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fa8 RCSB], [https://www.ebi.ac.uk/pdbsum/2fa8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fa8 ProSAT], [https://www.topsan.org/Proteins/MCSG/2fa8 TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fa8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fa8 OCA], [http://www.ebi.ac.uk/pdbsum/2fa8 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2fa8 RCSB]</span>
+
</table>
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Crystal Structure of the Putative Selenoprotein W-related family Protein from Agrobacterium tumefaciens'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fa/2fa8_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
2FA8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FA8 OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Agrobacterium tumefaciens]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fa8 ConSurf].
-
[[Category: Edwards, A.]]
+
<div style="clear:both"></div>
-
[[Category: Joachimiak, A.]]
+
__TOC__
-
[[Category: Kim, Y.]]
+
</StructureSection>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Agrfc]]
-
[[Category: Savchenko, A.]]
+
[[Category: Large Structures]]
-
[[Category: Xu, X.]]
+
[[Category: Edwards, A]]
-
[[Category: Zheng, H.]]
+
[[Category: Joachimiak, A]]
-
[[Category: 4 helix bundle]]
+
[[Category: Kim, Y]]
-
[[Category: alph-beta structure]]
+
[[Category: Structural genomic]]
-
[[Category: mcsg]]
+
[[Category: Savchenko, A]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Xu, X]]
-
[[Category: protein structure initiative]]
+
[[Category: Zheng, H]]
-
[[Category: psi]]
+
[[Category: Helix bundle]]
-
[[Category: structural genomic]]
+
[[Category: Alph-beta structure]]
-
 
+
[[Category: Mcsg]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:24:01 2008''
+
[[Category: PSI, Protein structure initiative]]
 +
[[Category: Unknown function]]

Current revision

Crystal Structure of the Putative Selenoprotein W-related family Protein from Agrobacterium tumefaciens

PDB ID 2fa8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools